mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 27.3% | 126.4 / 59.6 | 99 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 94 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 47 (0.780) | 14 (0.260) | 13/252 | 4.1 | 27.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 31 (0.580) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 48 (0.800) | 10 (0.190) | 10/252 | 5.0 | 21.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 31 (0.580) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3087889 | NA (NA) | 7 (0.130) | 7/264 | 6.5 | NA | intergenic (+29/‑395) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter |
| ? | NC_000913_3_pae_tpiA | = 3087894 | NA (NA) | intergenic (+34/‑390) | metK/galP | S‑adenosylmethionine synthetase/D‑galactose transporter | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 33 (0.550) | 6 (0.110) | 6/266 | 7.1 | 14.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 43 (0.760) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 264075 | 49 (0.810) | 6 (0.100) +A |
6/282 | 7.4 | 10.9% | coding (173/222 nt) | ykfH | uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 264097 | 50 (0.830) | coding (151/222 nt) | ykfH | uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 420930 = | 68 (1.130) | 5 (0.090) | 5/262 | 7.5 | 7.5% | intergenic (+20/‑56) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| ? | NC_000913_3_pae_tpiA | 420958 = | 60 (1.080) | intergenic (+48/‑28) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease | |||||
| * | ? | NC_000913_3_pae_tpiA | 105361 = | 61 (1.010) | 5 (0.090) | 5/260 | 7.5 | 8.2% | coding (57/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | NC_000913_3_pae_tpiA | = 105357 | 56 (1.020) | coding (53/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 34 (0.570) | 5 (0.090) | 5/266 | 7.6 | 11.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 44 (0.780) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3312708 | 67 (1.110) | 5 (0.090) | 5/266 | 7.6 | 8.0% | coding (70/945 nt) | truB | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase |
| ? | NC_000913_3_pae_tpiA | = 3312724 | 52 (0.920) | coding (54/945 nt) | truB | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 707781 | 52 (0.860) | 5 (0.090) | 5/266 | 7.6 | 9.6% | noncoding (12/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 707795 | 46 (0.820) | noncoding (26/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||