New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3787908 =	40 (0.570)	31 (0.440)	27/280	2.8	44.9%	coding (727/1392 nt)	PP_3350	hypothetical protein
	?	NC_002947	= 3787938	36 (0.510)					coding (697/1392 nt)	PP_3350	hypothetical protein

CTCAAGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3788043‑3787908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCAGGCACTG  <  NC_002947/3787938‑3787792                                                                                                                                                                                                                                                                                              CTCAAGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGC                                                                                                                                         <  3:166244/149‑1  TCAAGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCC                                                                                                                                        >  2:140868/1‑149    AAGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGC                                                                                                                                      >  6:396326/1‑149     AGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCT                                                                                                                                     <  1:140868/149‑1                                        CCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTG                                                                                                  >  4:181388/1‑149                                             GAAATCCGGGGAAGACAGGTGGGACGATGGCCGCAACAACAACATCAAATTCTACGGCCGCTCCGGCACCTTGCCGCTGTCGGCGTCGGGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTG                                                                                             <  5:107361/149‑1                                              AAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTG                                                                                             <  4:174188/148‑1                                                   CGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACC                                                                                       >  1:330774/1‑149                                                        AAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA                                                                                  <  2:263391/149‑1                                                             AGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACC                                                                                       >  8:154518/1‑139                                                             AGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACC                                                                                       <  7:154518/139‑1                                                              GTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTG                                                                                             <  8:338071/132‑1                                                              GTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTG                                                                                             >  7:338071/1‑132                                                                 GGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCATCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGTAACATGGACCTGCTAGCCTTTGGCCTG                                                                                             <  7:260690/129‑1                                                                  GGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCGTTGGCCTGGAAACCGCCGA‑CCGCAGCCTG                                                                       >  8:86047/1‑149                                                                       ATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGG                                                                  >  4:169818/1‑149                                                                          GCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGA                                                               <  5:280148/149‑1                                                                            AGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGT                                                             <  5:396326/149‑1                                                                                ACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGG                                                         >  3:232460/1‑149                                                                                ACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGG                                                         <  8:83093/149‑1                                                                                             ATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGC                                            >  3:104683/1‑149                                                                                                    GGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGATGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGACCCGCACCCTGGCCGGCGAGTCGGGTGAC                                                     <  1:214160/134‑1                                                                                                        TCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGG                                 >  3:95719/1‑149                                                                                                        TCTACGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGG                                 >  3:111556/1‑149                                                                                                            CGGCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACG                             >  5:216239/1‑149                                                                                                              GCACCTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCG                           <  3:169818/149‑1                                                                                                                  CTTGCCGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCGGCTG                       >  4:124618/1‑149                                                                                                                       CGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCT                                                                                              >  5:306532/1‑74                                                                                                                       CGCTGTCGGCGTCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCT                                                                                              <  6:306532/74‑1                                                                                                                                  TCGTGGATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCAGG       >  7:153682/1‑149                                                                                                                                       GATACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCAGGCACTG  <  3:124618/149‑1                                                                                                                                                                                                                                                                                              CTCAAGGACGGACGCAAGCTGGATGCATTCGCTGTGCGCCCGCTGAAAACCGGTGAAGACAGTTGGGACGATGGCAGCAACAACAACATCAAATTCTACGGCCTCTACGGCACCTTGCCGCTGTCGGCGTCGTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3788043‑3787908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACGGCACCTTGCCGCTGTCGGCGTCGTGGAACATGGACCTGCTAGCCTTTGGCCTGGAAACCGACGA‑CCGCACCCTGGCCGGCGAGTCGGGTGACGAGCAGCGCTACACTTTCGGCACGCGGCTGTTCGGCCGCCATCAGGCACTG  <  NC_002947/3787938‑3787792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.