New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3787908 =40 (0.570)31 (0.440) 27/280 2.8 44.9% coding (727/1392 nt) PP_3350 hypothetical protein
?NC_002947 = 3787938 36 (0.510)coding (697/1392 nt) PP_3350 hypothetical protein

CGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCG  >  NC_002947/3787761‑3788056
                                                                                                                                                    |                                                                                                                                                            
cGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTc                                                                                                                                                             <  8:229840/149‑1 (MQ=255)
cGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTc                                                                                                                                                             <  5:332192/149‑1 (MQ=255)
cGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTc                                                                                                                                                             <  2:214697/149‑1 (MQ=255)
 cagtgcctgatggcggccgaacagccgcgtgccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTc                                                                                                                                                             <  3:124618‑M1/2‑1 (MQ=255)
  gTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCa                                                                                                                                                           <  8:239673/149‑1 (MQ=255)
      cctgatggcggccgaacagccgcgtgccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCacga                                                                                                                                                        >  7:153682‑M1/143‑149 (MQ=255)
           acgaGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGa                                                                                                                                                  >  3:181388/1‑149 (MQ=255)
                gTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTc                                                                                                                                                             >  7:1205/1‑133 (MQ=255)
                gTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTc                                                                                                                                                             <  8:1205/133‑1 (MQ=255)
                gTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCg                                                                                                                                             >  4:104683/1‑149 (MQ=255)
                     aGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTACACGACGCCGACAGCTGCaac                                                                                                                                        >  3:34675/1‑148 (MQ=255)
                      cagccgcgtgccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAg                                                                                                                                        >  4:124618‑M1/127‑149 (MQ=255)
                        tccagtccagTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCg                                                                                                                                             <  1:39183/141‑1 (MQ=255)
                        tccagtccagTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCg                                                                                                                                             >  2:39183/1‑141 (MQ=255)
                        tccagtccagTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGt                                                                                                                                      >  4:402874/1‑148 (MQ=255)
                          cgcgtgccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGc                                                                                                                                    <  3:169818‑M1/27‑1 (MQ=255)
                          cagtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGt                                                                                                                                      <  3:402874/146‑1 (MQ=255)
                          cagtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGcc                                                                                                                                   >  8:153682/1‑149 (MQ=255)
                          cagtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGcc                                                                                                                                   >  4:232460/1‑149 (MQ=255)
                           agtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCg                                                                                                                                  <  5:328990/149‑1 (MQ=255)
                            gtccagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGt                                                                                                                                 <  1:264416/149‑1 (MQ=255)
                            cgtgccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCg                                                                                                                                  >  5:216239‑M1/121‑149 (MQ=255)
                               cagtGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTa                                                                                                                                >  2:302578/1‑147 (MQ=255)
                               cAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtc                                                                                                                              <  3:124618‑M2/149‑3 (MQ=255)
                                ccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTaga                                                                                                                              >  3:111556‑M1/117‑149 (MQ=255)
                                ccgaaagtgtagcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTaga                                                                                                                              >  3:95719‑M1/117‑149 (MQ=255)
                                    ccTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacga                                                                                                                         >  7:153682‑M2/1‑142 (MQ=255)
                                      tGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGt                                                                                                                        >  2:222479/1‑148 (MQ=255)
                                        aTGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAg                                                                                                                      >  1:317207/1‑148 (MQ=255)
                                         tGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGaa                                                                                                                    <  1:188550/149‑1 (MQ=255)
                                           gcgctgctcgtcacccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAAt                                                                                                                   >  3:104683‑M1/106‑149 (MQ=255)
                                               ccGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAt                                                                                                              <  2:317207/149‑1 (MQ=255)
                                                  aaCAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCAACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgtt                                                                                                           <  1:222479/149‑1 (MQ=255)
                                                   gtcacccgactcgccggccagggtgcgggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacatcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGcc                                                                                                                          <  1:214160‑M1/37‑1 (MQ=255)
                                                    cAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaag                                                                                                         >  4:124618‑M2/1‑126 (MQ=255)
                                                        cgcgTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgc                                                                                                     <  3:169818‑M2/149‑28 (MQ=255)
                                                        cccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttgttgt                                                                                                      >  3:232460‑M1/93‑149 (MQ=255)
                                                        cccgactcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGAtgttgttgt                                                                                                      <  8:83093‑M1/57‑1 (MQ=255)
                                                          cgTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccg                                                                                                   >  5:216239‑M2/1‑120 (MQ=255)
                                                            tGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTtgctg                                                                                                 <  4:55285/149‑1 (MQ=255)
                                                            actcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTtgct                                                                                                  <  5:396326‑M1/61‑1 (MQ=255)
                                                              tcgccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTtgctgc                                                                                                <  5:280148‑M1/63‑1 (MQ=255)
                                                              ccGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtaga                                                                                               >  3:95719‑M2/1‑116 (MQ=255)
                                                              ccGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtaga                                                                                               >  3:111556‑M2/1‑116 (MQ=255)
                                                                 ccggccagggtgcggtcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCAt                                                                                             >  4:169818‑M1/84‑149 (MQ=255)
                                                                      caggctgcggtcggcggtttccaggccaacggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTc‑‑‑‑‑‑‑‑c                                                                                >  8:86047‑M1/79‑149 (MQ=255)
                                                                         gcgcTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaat                                                                                    >  3:104683‑M2/1‑105 (MQ=255)
                                                                         gcgcTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAAc                                                                            >  4:84014/1‑149 (MQ=255)
                                                                          cgcTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCCACt                                                                           >  4:19988/1‑149 (MQ=255)
                                                                               ctCGTCACCCGACTCGCCGGCCAGGTTGCGGTCGTCGGTTTCCAGGCCAAAGGATAGCAGGTCCATGTTCCACGACGCCTACAGCGGAAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTc                                                                        <  1:302578/147‑1 (MQ=255)
                                                                                tcgtcggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCtt                                                                      <  2:263391‑M1/81‑1 (MQ=255)
                                                                                  gTCACCCGACTCGCCGGCCAGGGTGCGGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACATCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggcc                                                                                           <  1:214160‑M2/134‑38 (MQ=255)
                                                                                  gTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTccaact                                                                   >  6:320397/1‑144 (MQ=255)
                                                                                    cacaCGACTCGCCGGCCAGGGTGCGGTCGTCGGTATCCAGCCCAAAGGCTAGCAGGTCCATGTTCCACCACCCCGACACCGGCAAGCTGCCGTAGACGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCATAAccc                                                                 >  4:353286/1‑148 (MQ=255)
                                                                                     ggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACt                                                                           <  7:154518‑M1/76‑1 (MQ=255)
                                                                                     ggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACt                                                                           >  8:154518‑M1/64‑139 (MQ=255)
                                                                                     ggtttccaggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCg                                                                 >  1:330774‑M1/64‑149 (MQ=255)
                                                                                     aCCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCgg                                                                >  2:142474/1‑149 (MQ=255)
                                                                                      cccGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgt                                                                       >  3:232460‑M2/1‑92 (MQ=255)
                                                                                      cccGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgt                                                                       <  8:83093‑M2/149‑58 (MQ=255)
                                                                                          aCTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgct                                                                   <  5:396326‑M2/149‑62 (MQ=255)
                                                                                           caggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCCCGACGCCGACAGCGGCAAGGTGCCGGAGCGGCCGTAGAATTTGATGTTGTTGTTGCGGCCATCGTC‑‑‑‑‑‑‑‑CCACCTGTCTTCCCCGGATTTc                                                           <  5:107361‑M1/92‑1 (MQ=255)
                                                                                           caggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAAc                                                                            >  7:338071‑M1/58‑132 (MQ=255)
                                                                                           caggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAAc                                                                            <  8:338071‑M1/75‑1 (MQ=255)
                                                                                           caggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGtttt                                                            <  4:174188‑M1/91‑1 (MQ=255)
                                                                                           caggccaaaggctagcaggtccatgttacacgacgccgacagcggcaaggtgccgtaTCCACGATGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTc‑‑‑‑‑‑‑‑cc                                                                               <  7:260690‑M1/72‑1 (MQ=255)
                                                                                            tCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgc                                                                 <  5:280148‑M2/149‑64 (MQ=255)
                                                                                            aggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCg                                                                                                                                             <  6:306532‑M1/18‑1 (MQ=255)
                                                                                            aggccaaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCg                                                                                                                                             >  5:306532‑M1/57‑74 (MQ=255)
                                                                                               gcGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCgg                                                      <  1:142474/148‑1 (MQ=255)
                                                                                               ccGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccat                                                              >  4:169818‑M2/1‑83 (MQ=255)
                                                                                                caaaggctagcaggtccatgttccacgacgccgacagcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCgg                                                      >  4:181388‑M1/53‑149 (MQ=255)
                                                                                                    cAGGCTGCGGTCGGCGGTTTCCAGGCCAACGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcc                                                         >  8:86047‑M2/1‑78 (MQ=255)
                                                                                                            ggTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAAt                                         <  3:84014/149‑1 (MQ=255)
                                                                                                             gtcgtcGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGTCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATg                                        >  4:237570/1‑149 (MQ=255)
                                                                                                               tcgtcgGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaactgtctt                                               <  2:263391‑M2/149‑82 (MQ=255)
                                                                                                                 gtcgGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCAGCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGGTTTCAGCGGGCGCCCCGCGAATGCAt                                     >  6:420123/1‑149 (MQ=255)
                                                                                                                    ggTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaactgtcttcaccg                                          >  1:330774‑M2/1‑63 (MQ=255)
                                                                                                                    ggTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaact                                                    <  7:154518‑M2/139‑77 (MQ=255)
                                                                                                                    ggTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaact                                                    >  8:154518‑M2/1‑63 (MQ=255)
                                                                                                                    ggTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGaa                                          <  1:360341/149‑1 (MQ=255)
                                                                                                                     gTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAAt                                         <  7:343402/149‑1 (MQ=255)
                                                                                                                      tttCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCTACAGCGGCAAGGTGCCGTATAGGCCGTAGAATTTGATGTGCTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGc                                <  3:353286/149‑1 (MQ=255)
                                                                                                                         ccAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCtt                              <  5:420123/148‑1 (MQ=255)
                                                                                                                          cAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccccgacgccgacagcggcaaggtgccggagcggccgtagaatttgatgttgttgttgcggccatcgtcccacctgtcttccccggatttc                                    <  5:107361‑M2/149‑93 (MQ=255)
                                                                                                                          cAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaactgtcttcaccggtttt                                     <  4:174188‑M2/148‑92 (MQ=255)
                                                                                                                          cAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaac                                                     >  7:338071‑M2/1‑57 (MQ=255)
                                                                                                                          cAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaac                                                     <  8:338071‑M2/132‑76 (MQ=255)
                                                                                                                          cAGGCCAAAGGCTAGCAGGTCCATGTTACACGACGCCGACAGCGGCAAGGTGCCGTAtccacgatgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtccc                                                        <  7:260690‑M2/129‑73 (MQ=255)
                                                                                                                           aGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcg                                                                                                              >  5:306532‑M2/1‑56 (MQ=255)
                                                                                                                           aGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcg                                                                                                              <  6:306532‑M2/74‑19 (MQ=255)
                                                                                                                               cAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAtccacgacgccgacagcggcaaggtgccgtagaggccgtagaatttgatgttgttgttgctgccatcgtcccaactgtcttcaccggttttcagcgg                               >  4:181388‑M2/1‑52 (MQ=255)
                                                                                                                                   agcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCt                   <  1:140868‑M1/132‑1 (MQ=255)
                                                                                                                                    gcggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCtt                  >  6:396326‑M1/17‑149 (MQ=255)
                                                                                                                                      tAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGcgtcc                        >  5:17929/1‑149 (MQ=255)
                                                                                                                                      ggcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCttga                >  2:140868‑M1/15‑149 (MQ=255)
                                                                                                                                       gcaaggtgccgtaTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCttgag               <  3:166244‑M1/136‑1 (MQ=255)
                                                                                                                                            gTCCATGTTCCACGACGTCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCttgaggttga          <  3:237570/149‑1 (MQ=255)
                                                                                                                                                    tCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGgcg  >  2:237597/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                            
CGGTCTGCCCGACGAGGTTCCAGCTCCAGTCCAGTGCCTGATGGCGGCCGAACAGCCGCGTGCCGAAAGTGTAGCGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCG  >  NC_002947/3787761‑3788056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.