New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 116151	79 (1.210)	4 (0.060)	4/252	NT	5.1%	coding (454/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase
	?	NC_002947	= 116188	72 (1.160)					coding (491/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase

CCCTGGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/115999‑116151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGCG  <  NC_002947/116188‑116042                                                                                                                                                                                                                                                                                                              CCCTGGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCGACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGTTGGCCTG                                                                                                                                                         >  5:410576/1‑149                GCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGG                                                                                                                                                        <  3:234674/135‑1                GCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGG                                                                                                                                                        >  4:234674/1‑135                  ATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGC                                                                                                                                                       >  3:165597/1‑134                  ATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGC                                                                                                                                                       <  4:165597/134‑1                                   GTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCG                                                                                                                         >  5:27664/1‑147                                              CCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGC                                                                                                            <  6:27664/149‑1                                                                                         GGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCC                                                                                                           >  7:273869/1‑107                                                                                         GGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCC                                                                                                           <  8:273869/107‑1                                                                                                                                                     GGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG     >  2:208505/1‑149                                                                                                                                                      GCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCGAGACCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG     <  2:328427/148‑1                                                                                                                                                      GCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG     <  3:128217/148‑1                                                                                                                                                      GCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG     <  6:290904/148‑1                                                                                                                                                        CGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGCG  >  6:202297/1‑149                                                                                                                                                                                                                                                                                                              CCCTGGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/115999‑116151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGCG  <  NC_002947/116188‑116042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.