New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 230790	73 (1.120)	4 (0.070)	4/248	NT	5.3%	coding (451/1419 nt)	PP_0179	putative efflux transporter
	?	NC_002947	= 230851	75 (1.230)					coding (512/1419 nt)	PP_0179	putative efflux transporter

AGGCGGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/230636‑230790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcgtgATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGCTACCGGCACCTTCTCG  <  NC_002947/230851‑230708                                                                                                                                                                                                                                                                                                             AGGCGGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTC                                                                                                                                                         >  8:182784/1‑148  GGCGGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCTAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAA                                                                                                                                                       <  1:27328/149‑1    CGGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGC                                                                                                                                                     <  2:314443/149‑1     GGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTGGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCG                                                                                                                                                    <  3:316347/149‑1       CTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTG                                                                                                                                                  >  5:231071/1‑149                       AAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTGATGCGGGCAGTGTCGG                                                                                                                                  >  2:33245/1‑149                                                       CGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTG                                                                                                  >  3:320966/1‑149                                                           GCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGC                                                                                                                                                     >  3:24177/1‑94                                                           GCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGC                                                                                                                                                     <  4:24177/94‑1                                                                              AGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATATGCCTTGGCAGCCTCGGTACCACGCTTGAA                                                                           <  1:33245/149‑1                                                                                GTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAG                                                                          <  4:320966/148‑1                                                                                                 CGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTG                                                                                                                                                  <  8:23529/59‑1                                                                                                 CGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTG                                                                                                                                                  >  7:23529/1‑59                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGCTACCGGCACCTTCT    >  7:77530/1‑149                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGCTACCGGCACCTTCT    >  8:213767/1‑149                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGC                  >  6:185652/1‑135                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGC                  <  5:185652/135‑1                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCAC                                                                 >  7:179602/1‑88                                                                                                                                                     AAGCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCAC                                                                 <  8:179602/88‑1                                                                                                                                                       GCGTGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGCTACCGGCACCTTCTCG  <  4:243043/149‑1                                                                                                                                                          TGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCG                                                                                         >  6:150243/1‑59                                                                                                                                                          TGATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCG                                                                                         <  5:150243/59‑1                                                                                                                                                                                                                                                                                                             AGGCGGCTTCAACGGTGGCGTCAAACTCGGCGCTCAGCGCTTGCAGGAGTCGGGCGAAGCCTTCCTGCAGCCCGAGAAGGTGCCGGTAGCCAACATCGGTGAGGCCATCATCAGTGCTTCGTACCAGTTCGACCTGTGGGGCACCTTCAAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/230636‑230790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caagcgtgATGCGGGCAGTGTCGGCAGCGGCCTGCACCGCGTCGGCATTTGCCTTGGCAGCCTCGGTACCACGCTTGAAGGTGCCCCACAGGTCGAACTGGTACGAAGCACTGATGATGGCCTCACCGATGTTGGCTACCGGCACCTTCTCG  <  NC_002947/230851‑230708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.