| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 237212 = | 73 (1.120) | 5 (0.080) | 4/248 | NT | 7.1% | coding (93/744 nt) | algR | alginate biosynthesis regulatory protein |
| ? | NC_002947 | 237246 = | 63 (1.030) | coding (127/744 nt) | algR | alginate biosynthesis regulatory protein | |||||
CAAAACACCACCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/237361‑237212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgctgATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTGGTGTTTTGCTCCGGGGATGATGAATACGGTGCAGAGG > NC_002947/237246‑237390 CAAAACACCACCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCGAGGCCTCATCGCCGTTGGTGGCGCT < 2:399522/149‑1 AAAACACCCCCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTG < 2:261535/149‑1 AAAACACCACCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTG < 2:126727/149‑1 AAAACACCACCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTG > 4:236502/1‑149 TTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTGATTGAAAGCCTCGAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTG > 6:341772/1‑149 TCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTGGTGTTT > 2:296291/1‑149 TCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGC > 5:385494/1‑132 TCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGC < 6:385494/132‑1 AGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTGGTGTTTT < 1:296291/148‑1 CGCTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTGGTGTTTTGCTCCGGGGATGATGAATACGGTGCAGAG > 3:273958/1‑149 CTGATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGAGGTGTTTTGCTCCGGGGATGATGAATACGGTGAAGAGG > 1:136329/1‑148 CAAAACACCACCGCGGGCGGCGCCTCGCGTTCGCACAGGCGAGCGGCAACCTGCAGGCCATCCAGGCCTGGCATGCCGATGTCCAGCAGGACCACATCGGGCTTGAGGCTTTCAATCAGCGCCAAGGCCTCATCGCCGTTGGTGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/237361‑237212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgctgATTGAAAGCCTCAAGCCCGATGTGGTCCTGCTGGACATCGGCATGCCAGGCCTGGATGGCCTGCAGGTTGCCGCTCGCCTGTGCGAACGCGAGGCGCCGCCCGCGGTGGTGTTTTGCTCCGGGGATGATGAATACGGTGCAGAGG > NC_002947/237246‑237390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |