New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	317963 =	59 (0.910)	5 (0.080)	5/258	NT	7.1%	coding (1779/1815 nt)	PP_0264	sensor histidine kinase
	?	NC_002947	318058 =	73 (1.150)					coding (1684/1815 nt)	PP_0264	sensor histidine kinase

TCACCACCAAGACCCGCACCCAGGGCCTGGGCCTGGGGCTGGCCATCTGTGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/318111‑317963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCC‑GGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGG  >  NC_002947/318058‑318204                                                                                                                                                                                                                                                                                                            TCACCACCAAGACCCGCACCCAGGGCCTGGGCCTGGGGCTGGCCATCTGTGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGC                                                                                                                                                      >  7:285764/1‑149                                             ATCTGTGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTC                                                                                                          >  6:414478/1‑149                                                  TGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGT                                                                                                     >  6:32450/1‑149                                                  TGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTG                                                                                                       <  5:414478/147‑1                                                        CCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGTGGGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTG                                                                                                 >  1:105617/1‑148                                                                     CTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTG                                                                                  <  5:32450/149‑1                                                                                                                                                    GGCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCC‑GGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCG   <  7:159538/149‑1                                                                                                                                                     GCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCC‑GGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGG  >  1:382547/1‑149                                                                                                                                                     GCTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCC‑GGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGG  <  6:265369/149‑1                                                                                                                                                      CTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCCGGGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGG  <  1:100835/149‑1                                                                                                                                                                                                                                                                                                            TCACCACCAAGACCCGCACCCAGGGCCTGGGCCTGGGGCTGGCCATCTGTGAAAGCCTGATGCGCGCCCTGGGCGGTGAACTGCTGCTGGCCAACCACCCGGAAGGT‑GGCGCAATGCTGACTCTCCAGCTGCGGGTGGCCGCATCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/318111‑317963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcTTTCACAGATGGCCAGCCCCAGGCCCAGGCCCTGGGTGCGGGTCTTGGTGGTGAAGAACGGCTCCTTGGCGTGCTCCAGGGCCTGGCGGCTGAAGCC‑GGGGCCGTTGTCACGGATGTACAGGTAGACGCAGTCATCACGCTGCTCGG  >  NC_002947/318058‑318204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.