New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	400299 =	NA (NA)	4 (0.060)	4/256	NT	12.8%	intergenic (+34/‑116)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	400368 =	28 (0.430)					intergenic (+103/‑47)	PP_0333/PP_0334	hypothetical protein/transposase

AGGTCTACGCAGATGGTTGTGCAAAGCTCCACATCAGTGGAAGACAGGGAATCGTGTTTCGAACTATGCTTTTTCATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTccat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/400446‑400299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAATCC  >  NC_002947/400368‑400519                                                                                                                                                                                                                                                                                                              AGGTCTACGCAGATGGTTGTGCAAAGCTCCACATCAGTGGAAGACAGGGAATCGTGTTTCGAACTATGCTTTTTCATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTC                                                                                                                                                         >  2:388512/1‑149             ATGGTTGTGCAAAGCTCCACATCAGTGGAAGACAGGGAATCGTGTTTCGAACTATGCTTTTTCATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCA                                                                                                                                                       <  1:403873/139‑1             ATGGTTGTGCAAAGCTCCACATCAGTGGAAGACAGGGAATCGTGTTTCGAACTATGCTTTTTCATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCA                                                                                                                                                       >  2:403873/1‑139                                                                            ATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACTGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACA                                                                                            <  3:23297/135‑1                                                                            ATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACTGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACA                                                                                            >  4:23297/1‑135                                                                                    GCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCC                                                                       >  6:173557/1‑148                                                                                                                         GCACTGTGATGCCTCGGCGGGGGCGAGTCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTG                                  <  5:173557/148‑1                                                                                                                                                      CATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAAT    >  1:87463/1‑149                                                                                                                                                       ATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCGTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAATC   >  1:309997/1‑149                                                                                                                                                        TGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTATGCACAACAATCTGCGTAGACCTGGCAAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGAATCAAATCC  >  3:232833/1‑149                                                                                                                                                                                                                                                                                                              AGGTCTACGCAGATGGTTGTGCAAAGCTCCACATCAGTGGAAGACAGGGAATCGTGTTTCGAACTATGCTTTTTCATGGTCTCGCCCTCGCTGCCGTTGGCTTCTTCGAACACCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTccat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/400446‑400299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTGGTCGGGTGATCTACGAAGATCGCATCAAATCC  >  NC_002947/400368‑400519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.