New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 400299 = | NA (NA) | 4 (0.060) | 4/256 | NT | 12.8% | intergenic (+34/‑116) | PP_0333/PP_0334 | hypothetical protein/transposase |
? | NC_002947 | 400368 = | 28 (0.430) | intergenic (+103/‑47) | PP_0333/PP_0334 | hypothetical protein/transposase |
GTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCAC > NC_002947/400152‑400428 | gtggACCGCAGCAACTTCAACTACCCGCTGCAGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGa > 6:290700/1‑148 (MQ=255) gACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCg > 6:275599/1‑149 (MQ=255) ccGCAGCAACTTCAACTACACGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGcc > 6:278312/1‑149 (MQ=255) cGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGccc > 3:244850/1‑149 (MQ=255) aaCTTCAACTACCCGCTGCTGGTGGGATCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCccgcc > 4:62554/1‑148 (MQ=255) aCTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑a < 1:48221/149‑1 (MQ=255) cTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑Ag < 5:275599/149‑1 (MQ=255) cTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑Ag > 7:154644/1‑149 (MQ=255) ttCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑Agg > 6:306843/1‑149 (MQ=255) aaCTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCAt < 4:244850/149‑1 (MQ=255) cccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAg > 1:388512/1‑149 (MQ=255) ccGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGt < 8:154644/149‑1 (MQ=255) gctgctGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGc > 7:332083/1‑149 (MQ=255) tgctgGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCa > 5:364027/1‑149 (MQ=255) ctgGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACg > 1:317571/1‑149 (MQ=255) tggtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACgg > 2:236452/1‑149 (MQ=255) tggtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACgg > 7:57055/1‑149 (MQ=255) tggtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACgg > 4:16320/1‑149 (MQ=255) tggtggGTTCCAAGGCGCTGCGCGAATTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACgg > 5:263956/1‑149 (MQ=255) gtggGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACggtg < 6:364027/149‑1 (MQ=255) ggTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCTCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACggtggt < 6:224222/148‑1 (MQ=255) gTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGgtgt < 1:369549/149‑1 (MQ=255) ttCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGtt > 2:63227/1‑149 (MQ=255) cAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCg > 8:92099/1‑148 (MQ=255) aaGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCgaa < 2:317571/149‑1 (MQ=255) tCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGc > 5:164502/1‑148 (MQ=255) aaGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCa > 2:78221/1‑144 (MQ=255) aaGGCGGCGGTAAACCCGGCGAATAATTTCAATGCTGGCAAGCCAGGGTGGTGATCTGAATGGTGCCCCATACAATGTAATCGATTGACTCGCCCCCGCCGCAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCa < 1:78221/145‑1 (MQ=21) cggTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATTGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCgaga < 1:132449/149‑1 (MQ=255) gCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAg < 7:38391/149‑1 (MQ=255) cGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGc < 5:134119/149‑1 (MQ=255) aagaagTTCACTGCTGGCAAGCCAGGGTGCAGATCAGAAGAGAGCGCCATAAAATGTAATCGATGGACTCGCCCCCTCCG‑AGGCATCACAGTGCCACGGAGGTGTTAGAAGAAGCCAACGGCAGCGAGGCCGAGACCATGAAAAAGCa > 5:138391/1‑148 (MQ=18) agaagTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCTCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 5:290700/149‑1 (MQ=255) gtCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCg < 2:223011/148‑1 (MQ=255) aCTGCTGGCAAGCGAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 8:79872/149‑1 (MQ=255) aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 7:92099/149‑1 (MQ=255) aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 5:278312/149‑1 (MQ=255) ctgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAac < 5:383535/149‑1 (MQ=255) ctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac > 2:93684/1‑148 (MQ=255) gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa < 6:263956/147‑1 (MQ=255) gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa < 8:57055/147‑1 (MQ=255) gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt < 6:164502/149‑1 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca < 4:79127/139‑1 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca > 3:79127/1‑139 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTg < 3:389601/149‑1 (MQ=255) ggTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCgaa < 3:262070/85‑1 (MQ=255) ggTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCgaa > 4:262070/1‑85 (MQ=255) cTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc < 1:236452/149‑1 (MQ=255) gATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc < 7:222447/136‑1 (MQ=255) gATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc > 8:222447/1‑136 (MQ=255) cTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 6:170209/116‑1 (MQ=255) gCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAg > 6:71738/1‑149 (MQ=255) tGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCtt < 5:355997/149‑1 (MQ=39) cgcCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGTCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg < 5:306843/149‑1 (MQ=38) cgcCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt < 5:87217/148‑1 (MQ=38) gcCATACACTGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc < 7:261747/149‑1 (MQ=21) gcCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc < 1:63227/149‑1 (MQ=37) ccATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGca < 3:62554/149‑1 (MQ=35) aTACAATGTAATCGATGGACTCGCCCCCCCCG‑AGCCATAACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAAGAAAAAGCATAGTTCGAAAAACGATTCCCTCTCTACCACTGATCTGTAGCTTTGcac > 8:360232/1‑148 (MQ=11) | GTGGACCGCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCG‑AGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCAC > NC_002947/400152‑400428 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |