| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 400299 = | NA (NA) | 4 (0.060) | 4/256 | NT | 12.8% | intergenic (+34/‑116) | PP_0333/PP_0334 | hypothetical protein/transposase |
| ? | NC_002947 | 400368 = | 28 (0.430) | intergenic (+103/‑47) | PP_0333/PP_0334 | hypothetical protein/transposase | |||||
GGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTG > NC_002947/400220‑400487 | aggtctacgcagatggttgtgcaaagctccacatcagtggaagacagggaatcgtgtttcgaactatgctttttcatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtc > 2:388512‑M2/149‑149 (MQ=255) gCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAg < 7:38391/149‑1 (MQ=255) cGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGc < 5:134119/149‑1 (MQ=255) atggttgtgcaaagctccacatcagtggaagacagggaatcgtgtttcgaactatgctttttcatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtCCa < 1:403873‑M2/3‑1 (MQ=255) atggttgtgcaaagctccacatcagtggaagacagggaatcgtgtttcgaactatgctttttcatggtctcgccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtCCa > 2:403873‑M2/137‑139 (MQ=255) aagaagTTCACTGCTGGCAAGCCAGGGTGCAGATCAGAAGAGAGCGCCATAAAATGTAATCGATGGACTCGCCCCCTCCGAGGCATCACAGTGCCACGGAGGTGTTAGAAGAAGCCAACGGCAGCGAGGCCGAGACCATGAAAAAGCa > 5:138391/1‑148 (MQ=18) agaagTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCTCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 5:290700/149‑1 (MQ=255) gtCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCg < 2:223011/148‑1 (MQ=255) aCTGCTGGCAAGCGAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 8:79872/149‑1 (MQ=255) aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 7:92099/149‑1 (MQ=255) aCTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGaaa < 5:278312/149‑1 (MQ=255) ctgctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAac < 5:383535/149‑1 (MQ=255) ctgGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAacac > 2:93684/1‑148 (MQ=255) gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa < 8:57055/147‑1 (MQ=255) gCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGa < 6:263956/147‑1 (MQ=255) gCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCt < 6:164502/149‑1 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca > 3:79127/1‑139 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAaca < 4:79127/139‑1 (MQ=255) ccAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTg < 3:389601/149‑1 (MQ=255) cTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCAc < 1:236452/149‑1 (MQ=255) gATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc < 7:222447/136‑1 (MQ=255) gATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTcc > 8:222447/1‑136 (MQ=255) cTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATa < 6:170209/116‑1 (MQ=255) gCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAg > 6:71738/1‑149 (MQ=255) tGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCtt < 5:355997/149‑1 (MQ=39) cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGTCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTg < 5:306843/149‑1 (MQ=38) cgcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCttt < 5:87217/148‑1 (MQ=38) gcCATACACTGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc < 7:261747/149‑1 (MQ=21) gcCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGc < 1:63227/149‑1 (MQ=37) ccATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGca < 3:62554/149‑1 (MQ=35) aTACAATGTAATCGATGGACTCGCCCCCCCCGAGCCATAACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCAAGAAAAAGCATAGTTCGAAAAACGATTCCCTCTCTACCACTGATCTGTAGCTTTGcac > 8:360232/1‑148 (MQ=11) atggtctcgccctcgctgccgttggcttcttcgaacaccactgtggcactgtgatgcctcggcgggggcgagtCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGcaca > 4:23297‑M2/74‑135 (MQ=255) atggtctcgccctcgctgccgttggcttcttcgaacaccactgtggcactgtgatgcctcggcgggggcgagtCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGcaca < 3:23297‑M2/62‑1 (MQ=255) gccctcgctgccgttggcttcttcgaacaccaccgtggcactgtgatgcctcggcgggggcgagtCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGcc > 6:173557‑M2/66‑148 (MQ=255) gcactgtgatgcctcggcgggggcgagtCCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTg < 5:173557‑M2/120‑1 (MQ=255) | GGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGTGTTCGAAGAAGCCAACGGCAGCGAGGGCGAGACCATGAAAAAGCATAGTTCGAAACACGATTCCCTGTCTTCCACTGATGTGGAGCTTTGCACAACCATCTGCGTAGACCTGGCCAAACAGGTCTTCCAATTAGCAGGCGAGGACGCTACTG > NC_002947/400220‑400487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |