New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 497023	90 (1.380)	5 (0.080)	5/248	NT	5.3%	coding (895/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	= 497096	93 (1.520)					coding (968/2388 nt)	PP_0409	two‑component system sensor histidine kinase

GCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/496875‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgcc‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAA  <  NC_002947/497096‑496951                                                                                                                                                                                                                                                                                                            GCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC                                                                                                                                                       <  6:261208/149‑1  CCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC                                                                                                                                                       <  6:255376/148‑1                                        GCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCG                                                                                                             >  6:259683/1‑149                                                 ATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCCGTCAGCAGCGCCAGCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAAC                                                                                                       <  8:243616/149‑1                                                                                  GCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGC                                                                   <  8:21203/149‑1                                                                                    AGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCA                                                                 <  5:259683/149‑1                                                                                       ACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGCCCACGCTGGGGTGGCAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACAC                                                              <  5:354939/149‑1                                                                                                                                              GCAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGC       <  4:182370/149‑1                                                                                                                                               CAACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCC      <  3:203673/149‑1                                                                                                                                                AACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCA     <  2:216178/149‑1                                                                                                                                                AACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGC       >  4:21125/1‑147                                                                                                                                                 ACGCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAn    <  2:206197/149‑2                                                                                                                                                   GCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCTCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAA  <  3:204366/149‑1                                                                                                                                                   GCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAA  <  5:54705/149‑1                                                                                                                                                   GCC‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGA   >  4:204366/1‑148                                                                                                                                                                                                                                                                                                            GCCGGCCAAGGAGCTGGAGCAACTGCATCAGCGCTGGTTGCAGCCGAAATACCCGCGCCTGAGCGAGTCGCCGGGCTTCTGGCAGAACATGGCCTTGTTGTTCGGTCTGTTGCTGTTGTGTGCCTTGGCCACGCTGGTGTGGCAACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/496875‑497023 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaacgcc‑TCTTC‑GCG‑CACCTGGCGCTCAACAAGGCTTTCTCGCGCGGCCAACAGGCTGCGCTCCAGCTGGCGCTGCTGACGGCGTTGCCACACCAGCGTGGCCAAGGCACACAACAGCAACAGACCGAACAACAAGGCCATGTTCTGCCAGAA  <  NC_002947/497096‑496951

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.