New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1932033	69 (1.060)	4 (0.060)	4/254	NT	5.5%	coding (501/636 nt)	rluA	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA
	?	NC_002947	= 1932067	72 (1.150)					coding (467/636 nt)	rluA	bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA

GTACAGGCCCTGCAAAATCAGAACGGCGCAGGGCACTCGAACTTCAACCGCTGCCCGGACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1931881‑1932033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATCGCCTGTACGCCAACCCGCAAGCCCTGGCGGCCCATGAGCGGCTGTGCCTGCATGCCTCGATGCTGAGCTTTACCCACCCGGTGTCCGGGCAGCG  <  NC_002947/1932067‑1931929                                                                                                                                                                                                                                                                                                      GTACAGGCCCTGCAAAATCAGAACGGCGCAGGGCACTCGAACTTCAACCGCTGCCCGGACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACC                                                                                                                                                 <  7:212593/149‑1      GGCCCTGCAAAATCAGAACGGCGCAGGGCACTCGAACTTCAACCGCTGCCCGGACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAG                                                                                                                                              >  6:405442/1‑147                                             CAACCGCTGCCCGGACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGG                                                                                                      <  4:110548/148‑1                                                           ACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGTGCCGCCAGGGCTTGCGGGTTGGCGT‑‑‑‑TCG‑‑CA‑CCAGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATCGCCTGTACGCCAACCC                                                                                <  2:251898/149‑1                                                                                          ATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATC                                                                                                >  3:195087/1‑109                                                                                          ATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATC                                                                                                <  4:195087/109‑1                                                                                                                                                       AGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATCGCCTGTACGCCAACCCGCAAGCCCTGGCGGCCCATGAGCGGCTGTGCCTGCATGCCTCGATGCTGAGCTTTACCCACCCGGTGTCCGGGCAGCG  <  1:72147/142‑1                                                                                                                                                       AGCTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATCGCCTGTACGCCAACCCGCAAGCCCTGGCGGCCCATGAGCGGCTGTGCCTGCATGCCTCGATGCTGAGCTTTACCCACCCGGTGTCCGGGCAGCG  >  2:72147/1‑142                                                                                                                                                                                                                                                                                                      GTACAGGCCCTGCAAAATCAGAACGGCGCAGGGCACTCGAACTTCAACCGCTGCCCGGACACCGGGTGGGTAAAGCTCAGCATCGAGGCATGCAGGCACAGCCGCTCATGGGCCGCCAGGGCTTGCGGGTTGGCGTACAGGCGATCACCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1931881‑1932033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcTGCGCGTGCACATGCTGTCGATCGGGCACCCGCTGCTGGGTGATCGCCTGTACGCCAACCCGCAAGCCCTGGCGGCCCATGAGCGGCTGTGCCTGCATGCCTCGATGCTGAGCTTTACCCACCCGGTGTCCGGGCAGCG  <  NC_002947/1932067‑1931929

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.