New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1975504	50 (0.770)	3 (0.050)	3/250	NT	6.0%	coding (436/1104 nt)	pheA	bifunctional chorismate mutase/prephenate dehydratase
	?	NC_002947	= 1975538	46 (0.750)					coding (470/1104 nt)	pheA	bifunctional chorismate mutase/prephenate dehydratase

AGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1975350‑1975504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtggCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTG  <  NC_002947/1975538‑1975392                                                                                                                                                                                                                                                                                                                AGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCG                                                                                                                                                           <  5:332262/149‑1  GAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACATCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCCTGAAGTGGCGGCCGGTGCCGTCAACTTCGG                                                                                                                                                          >  5:204500/1‑149    GCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTG                                                                                                                                                        >  5:291772/1‑149                                        CTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTGTGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGG                                                                                                                     >  7:78111/1‑148                                           CACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGT                                                                                                                                                         >  1:50958/1‑109                                           CACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGT                                                                                                                                                         <  2:50958/109‑1                                                 GGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTGTGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCG                                                                                                           <  3:293529/149‑1                                                   CGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTGTGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAA                                                                                                         <  8:78111/149‑1                                                                                                                                                     GGTGTGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCT       <  8:143970/149‑1                                                                                                                                                      GTGTGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTG      <  6:12012/149‑1                                                                                                                                                         TGGCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGG    <  4:108615/148‑1                                                                                                                                                           GCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCATGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTG  >  2:395501/1‑148                                                                                                                                                                                                                                                                                                                AGAGCCGCTGAAAATCGCCTACCTCGGCCCTGAAGGTACCTTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGGTGCCGTCAACTTCGGTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1975350‑1975504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtggCTGACCGCACCTTCAGTGGAGTTTTCCACCGGCACCACACCGAAGTTGACGGCACCGGCCGCCACTTCACGGAACACTTCGTCGATGGCCGCCATCGGCCGACTGATCACCGCGTGGCCGAAGTGCTTCATGGCCGCCGCCTGGGTG  <  NC_002947/1975538‑1975392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.