New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1975504	50 (0.770)	3 (0.050)	3/250	NT	6.0%	coding (436/1104 nt)	pheA	bifunctional chorismate mutase/prephenate dehydratase
	?	NC_002947	= 1975538	46 (0.750)					coding (470/1104 nt)	pheA	bifunctional chorismate mutase/prephenate dehydratase

TTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGCCCAGTG  >  NC_002947/1975390‑1975685                                                                                                                                                      |                                                                                                                                                     ttCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAg                                                                                                                                                      >  3:324556/1‑149 (MQ=255) ttCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAg                                                                                                                                                      >  3:201537/1‑149 (MQ=255)   cACCCAGGCGGCGGCCATGAAGCACTTCGGCCATGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGc                                                                                                                                                     >  2:395501‑M2/1‑147 (MQ=255)     cccAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGcca                                                                                                                                                   <  4:108615‑M2/148‑4 (MQ=255)       cAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGccacac                                                                                                                                                <  6:12012‑M2/149‑7 (MQ=255)        aGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGccacacc                                                                                                                                               <  8:143970‑M2/149‑8 (MQ=255)                      aaGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTcc                                                                                                                                  <  6:185604/148‑1 (MQ=255)                          aCTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTACCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAg                                                                                                                             <  8:142497/149‑1 (MQ=255)                                           aTCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCGTGTACCGTCAATATGGGTGAGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGAttt                                                                                                             <  1:130346/149‑1 (MQ=255)                                              aGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCgg                                                                                                         >  5:124801/1‑149 (MQ=255)                                              aGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCg                                                                                                          <  1:402468/148‑1 (MQ=255)                                                  ggCCGATGGCGGCCATCGACGTAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAg                                                                                                     <  3:287312/149‑1 (MQ=255)                                                  ggCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAg                                                                                                     >  5:137756/1‑149 (MQ=255)                                                    ccGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGt                                                                                                   >  3:150163/1‑149 (MQ=255)                                                     cGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTc                                                                                                  <  8:214313/149‑1 (MQ=255)                                                       aTGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGa                                                                                                <  4:201537/149‑1 (MQ=255)                                                          gcggcCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCt                                                                                             <  5:12012/149‑1 (MQ=255)                                                            ggcCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGc                                                                                           <  7:143970/149‑1 (MQ=255)                                                            ggcCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGc                                                                                           <  6:124801/149‑1 (MQ=255)                                                                aTCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTAt                                                                                       >  8:290009/1‑149 (MQ=255)                                                                 tCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATc                                                                                      <  7:113615/149‑1 (MQ=255)                                                                    acgaAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATccac                                                                                   >  4:371684/1‑149 (MQ=255)                                                                    acgaAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATccac                                                                                   <  6:291772/149‑1 (MQ=255)                                                                      gaAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAg                                                                                                     >  5:6470/1‑129 (MQ=255)                                                                      gaAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAg                                                                                                     <  6:6470/129‑1 (MQ=255)                                                                       aaGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATccaccac                                                                                <  3:108615/149‑1 (MQ=255)                                                                        aGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATccaccacc                                                                               <  3:371684/149‑1 (MQ=255)                                                                            ttCCGTGAAGTGGCGGCCG‑GTGCCGTGAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTg                                                                                                            >  1:218227/1‑116 (MQ=255)                                                                            ttCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTg                                                                                                            <  2:218227/116‑1 (MQ=255)                                                                                   aaGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCtggt                                                                     <  4:338544/148‑1 (MQ=255)                                                                                   aaGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCtggt                                                                     <  4:150163/148‑1 (MQ=255)                                                                                       ggcggcCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCAGCAGGtggtg‑gtgg                                                               <  6:137756/149‑4 (MQ=255)                                                                                        gcggcCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCga                                                              <  5:171046/149‑1 (MQ=255)                                                                                                     gTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGAc                                                  >  6:348049/1‑149 (MQ=255)                                                                                                     gTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGAc                                                  >  2:64172/1‑149 (MQ=255)                                                                                                      tCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTc                                                                                                  >  8:12890/1‑101 (MQ=255)                                                                                                      tCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTc                                                                                                  <  7:12890/101‑1 (MQ=255)                                                                                                      tCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGAcc                                                 >  8:105414/1‑149 (MQ=255)                                                                                                       cAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGAcc                                                 >  2:314849/1‑148 (MQ=255)                                                                                                          cTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACa                                             <  7:290009/149‑1 (MQ=255)                                                                                                           ttCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGccacaccgaagttgacggcaccggccgccacttcacggaacacttcgtcgatggccgccatcggccgactgatcaccgcgtggccgaagtgcttcatggccgccg                                             <  8:78111‑M2/149‑106 (MQ=255)                                                                                                           ttCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAg                                            >  7:205344/1‑149 (MQ=255)                                                                                                             cGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGccacaccgaagttgacggcaccggccgccacttcacggaacacttcgtcgatggccgccatcggccgactgatcaccgcgtggccgaagtgcttcatggccgccgcc                                           <  3:293529‑M2/149‑108 (MQ=255)                                                                                                               gtgtGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATc                                        >  3:270663/1‑149 (MQ=255)                                                                                                                     tgCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGc                                  <  4:324556/149‑1 (MQ=255)                                                                                                                       ccGGTGGAAAACTCCACTGAAGGTGCGGTCAGccacaccgaagttgacggcaccggccgccacttcacggaacacttcgtcgatggccgccatcggccgactgatcaccgcgtggccgaagtgcttcatggccgccgcctgggtgaag                                  >  7:78111‑M2/1‑32 (MQ=255)                                                                                                                        cGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATc                               <  7:105414/149‑1 (MQ=255)                                                                                                                        cGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATc                               <  1:64172/149‑1 (MQ=255)                                                                                                                         ggTGGAAAACTCCACTGAAGGTGCCGTCAGCCACACCCTGGACAGCTTCCTCGAGGATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATc                               >  8:76071/1‑148 (MQ=255)                                                                                                                             gAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTc                          >  3:232515/1‑149 (MQ=255)                                                                                                                                     cACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGcc                   >  5:223457/1‑148 (MQ=255)                                                                                                                                         gAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTc              >  5:315998/1‑149 (MQ=255)                                                                                                                                             gTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTGAGGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCt           <  1:314849/149‑1 (MQ=255)                                                                                                                                                cGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGTGAGAACACCaa                                                     >  3:261738/1‑103 (MQ=255)                                                                                                                                                cGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGTGAGAACACCaa                                                     <  4:261738/103‑1 (MQ=255)                                                                                                                                                  gTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGcc       >  1:41364/1‑147 (MQ=255)                                                                                                                                                  gTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGCCCa     <  4:232515/149‑1 (MQ=255)                                                                                                                                                     aGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGCCCAGTg  >  8:238030/1‑149 (MQ=255)                                                                                                                                                     aGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGCCCAGTg  <  4:270663/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTCACCCAGGCGGCGGCCATGAAGCACTTCGGCCACGCGGTGATCAGTCGGCCGATGGCGGCCATCGACGAAGTGTTCCGTGAAGTGGCGGCCG‑GTGCCGTCAACTTCGGTGTGGTGCCGGTGGAAAACTCCACTGAAGGTGCGGTCAGCCACACCCTGGACAGCTTCCTCGAGCATGACATGGTGATTTGCGGTGAGGTCGAGCTGCGTATCCACCACCACCTGCTGGTG‑GGCGAGAACACCAAGACCGACAGCATCACCCGCATCTACTCCCACGCCCAGTCGCTGGCCCAGTG  >  NC_002947/1975390‑1975685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.