New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2020198 =	46 (0.710)	4 (0.060)	4/252	NT	8.7%	coding (151/1416 nt)	PP_1798	outer membrane efflux protein
	?	NC_002947	2020246 =	40 (0.640)					coding (199/1416 nt)	PP_1798	outer membrane efflux protein

CGCTCAGCCTCGTTCTTGCGCAGGATGCGGCTGGAGTTGGCATTGGCCGACACCTGGGGCAGCAGGCTACCCAGCGCTGCCCGCTGCTGTTCACTGGCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2020346‑2020198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAA  >  NC_002947/2020246‑2020358                                                                                                                                                                                                                                                                        CGCTCAGCCTCGTTCTTGCGCAGGATGCGGCTGGAGTTGGCATTGGCCGACACCTGGGGCAGCAGGCTACCCAGCGCTGCCCGCTGCTGTTCACTGGCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGCTCCTCCAGGCGCGC                                                                                                                   <  7:346733/149‑1                                                                                                GGCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGC                    >  4:164082/1‑149                                                                                                 GCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAG                                                                   >  5:118786/1‑101                                                                                                 GCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAG                                                                   <  6:118786/101‑1                                                                                                                  GTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAA  <  3:164082/149‑1                                                                                                                                                                                                                                                                        CGCTCAGCCTCGTTCTTGCGCAGGATGCGGCTGGAGTTGGCATTGGCCGACACCTGGGGCAGCAGGCTACCCAGCGCTGCCCGCTGCTGTTCACTGGCAGAGCGCGCACGCGCGTAAGCGGCAAGGACCCGCGGGTCCTCCAGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2020346‑2020198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAA  >  NC_002947/2020246‑2020358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.