New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2020198 =	46 (0.710)	4 (0.060)	4/252	NT	8.7%	coding (151/1416 nt)	PP_1798	outer membrane efflux protein
	?	NC_002947	2020246 =	40 (0.640)					coding (199/1416 nt)	PP_1798	outer membrane efflux protein

TGCTGCGTTTGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCG  >  NC_002947/2020055‑2020346                                                                                                                                                |                                                                                                                                                     tgctgcGTTTGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGgcgcgc                                                                                                                                                 <  6:316604/149‑1 (MQ=255)      cGTTTGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTgga                                                                                                                                            <  7:314624/149‑1 (MQ=255)      cGTTTGTTACCTGGAGTGATGATGTGCAAGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTgga                                                                                                                                            <  3:182976/149‑1 (MQ=255)       gTTTGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTggag                                                                                                                                           >  4:193183/1‑149 (MQ=255)        tttGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTggagg                                                                                                                                          <  3:193183/149‑1 (MQ=255)                 tGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCCCggt                                                                                                                                 >  4:192015/1‑148 (MQ=255)                        atgatgTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCTTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTg                                                                                                                           <  5:184909/148‑1 (MQ=255)                        atgatgTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGc                                                                                                                          >  5:187309/1‑149 (MQ=255)                             gtgCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCt                                                                                                                      >  3:290198/1‑148 (MQ=255)                               ttatagaggtcgcgctcagcctcgttcttgcgcaggatgcggctggagttggcattggccgacacctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTAc                                                                                                                   <  3:164082‑M1/36‑1 (MQ=255)                               gCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTAc                                                                                                                   >  6:18524/1‑149 (MQ=255)                                cctGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGGTGGACCTGGCGGGACTGTAGCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTAc                                                                                                                   <  6:292472/146‑1 (MQ=255)                                             cAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                     <  5:18524/149‑1 (MQ=255)                                             cAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACACGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                     >  3:259378/1‑149 (MQ=255)                                                gCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                  >  7:213154/1‑149 (MQ=255)                                                 gcctcgttcttgcgcaggatgcggctggagttggcattggccgacacctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGcc                                                                                                 >  4:164082‑M1/96‑149 (MQ=255)                                                          tGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAAc                                                                                          <  7:305113/147‑1 (MQ=255)                                                               tggaatgATGCCGCTGGTGAAGATCCAAGAGGGGTTTCGGCTTCGACTTAAGGGGTGGACCTGGCGGGTCTGTACCGGGACGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                   <  3:192015/148‑1 (MQ=255)                                                               gggaaggATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                   >  7:128822/1‑149 (MQ=255)                                                               gggaaggATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                   >  7:112923/1‑149 (MQ=255)                                                                          cGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTgg                                                                        <  8:112923/149‑1 (MQ=255)                                                                          cGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTgg                                                                        <  8:213154/149‑1 (MQ=255)                                                                             tGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTa                                                                     <  8:128822/149‑1 (MQ=255)                                                                                    cagcCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCAcgcgcgtaag                                                                                                    >  2:87508/1‑107 (MQ=255)                                                                                    cagcCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCAcgcgcgtaag                                                                                                    <  1:87508/111‑5 (MQ=255)                                                                                      gcCAAGAGGGGTTGAGGCTTCGAGTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                            <  4:259378/149‑1 (MQ=255)                                                                                         aaGAGGGCTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGAACCGTGAGGCGCGCCTTGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGATCTGCCAGTGAACACCAGCGGGCAGCGCTGGGTAGCCGGCTGacc                                                          >  4:237163/1‑148 (MQ=255)                                                                                          agagGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGccc                                                          >  7:138492/1‑147 (MQ=255)                                                                                           gagGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAg                                                       <  8:138492/149‑1 (MQ=255)                                                                                             ggggTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGgt                                                     <  4:395690/149‑1 (MQ=255)                                                                                                ctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                  >  5:118786‑M1/49‑101 (MQ=255)                                                                                                ctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                  <  6:118786‑M1/53‑1 (MQ=255)                                                                                                    cGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACGGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGGGTGCGCGCTCTGCCAGTGAAGAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGc                                               <  4:290198/148‑1 (MQ=255)                                                                                                     ggCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGcc                                              <  6:187309/148‑1 (MQ=255)                                                                                                        ttCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATg                                          >  8:343471/1‑149 (MQ=255)                                                                                                                      tGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                     >  2:331560/1‑76 (MQ=255)                                                                                                                      tGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                     <  1:331560/76‑1 (MQ=255)                                                                                                                        gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                            <  8:223171/115‑1 (MQ=255)                                                                                                                        gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                            >  7:223171/1‑115 (MQ=255)                                                                                                                        gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCAt                          >  1:405630/1‑149 (MQ=255)                                                                                                                         aCCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATc                         >  2:134876/1‑149 (MQ=255)                                                                                                                              gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCggg                                                                                 <  2:201031/88‑1 (MQ=255)                                                                                                                              gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCggg                                                                                 >  1:201031/1‑88 (MQ=255)                                                                                                                              gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGGCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgc                     <  1:134876/148‑1 (MQ=255)                                                                                                                               cGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgcgc                   <  2:405630/149‑1 (MQ=255)                                                                                                                                gggACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgcgc                   >  6:268480/1‑148 (MQ=255)                                                                                                                                   aCTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAg                >  8:218767/1‑148 (MQ=255)                                                                                                                                    cTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGaa              >  6:319551/1‑149 (MQ=255)                                                                                                                                       tACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGaa              <  7:343471/146‑1 (MQ=255)                                                                                                                                          cGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGc        <  5:319551/149‑1 (MQ=255)                                                                                                                                            tGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCt       >  6:45512/1‑148 (MQ=255)                                                                                                                                              aGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAg    <  7:218767/149‑1 (MQ=255)                                                                                                                                                GCGCGCCTGGAGGAGCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAgcg  <  7:346733‑M1/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     TGCTGCGTTTGTTACCTGGAGTGATGATGTGCATGGTCGCCTGGCAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCG  >  NC_002947/2020055‑2020346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.