New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2020198 =	46 (0.710)	4 (0.060)	4/252	NT	8.7%	coding (151/1416 nt)	PP_1798	outer membrane efflux protein
	?	NC_002947	2020246 =	40 (0.640)					coding (199/1416 nt)	PP_1798	outer membrane efflux protein

CAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCT  >  NC_002947/2020099‑2020382                                                                                                                                                    |                                                                                                                                         cAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                                                         <  5:18524/149‑1 (MQ=255) cAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACACGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                                                         >  3:259378/1‑149 (MQ=255)    gCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                                                      >  7:213154/1‑149 (MQ=255)     gcctcgttcttgcgcaggatgcggctggagttggcattggccgacacctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGcc                                                                                                                                     >  4:164082‑M1/96‑149 (MQ=255)              tGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAAc                                                                                                                              <  7:305113/147‑1 (MQ=255)                   tggaatgATGCCGCTGGTGAAGATCCAAGAGGGGTTTCGGCTTCGACTTAAGGGGTGGACCTGGCGGGTCTGTACCGGGACGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                                                       <  3:192015/148‑1 (MQ=255)                   gggaaggATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                                                       >  7:112923/1‑149 (MQ=255)                   gggaaggATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCg                                                                                                                       >  7:128822/1‑149 (MQ=255)                              cGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTgg                                                                                                            <  8:112923/149‑1 (MQ=255)                              cGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTgg                                                                                                            <  8:213154/149‑1 (MQ=255)                                 tGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTa                                                                                                         <  8:128822/149‑1 (MQ=255)                                          gcCAAGAGGGGTTGAGGCTTCGAGTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                                                                <  4:259378/149‑1 (MQ=255)                                             aaGAGGGCTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGAACCGTGAGGCGCGCCTTGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGATCTGCCAGTGAACACCAGCGGGCAGCGCTGGGTAGCCGGCTGacc                                                                                              >  4:237163/1‑148 (MQ=255)                                              agagGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGccc                                                                                              >  7:138492/1‑147 (MQ=255)                                               gagGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAg                                                                                           <  8:138492/149‑1 (MQ=255)                                                 ggggTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGgt                                                                                         <  4:395690/149‑1 (MQ=255)                                                    ctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                                                      >  5:118786‑M1/49‑101 (MQ=255)                                                    ctggggcagcaggctacccagcgctgcccgctgctgttcactggcagaGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGc                                                                                                                                      <  6:118786‑M1/53‑1 (MQ=255)                                                        cGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACGGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGGGTGCGCGCTCTGCCAGTGAAGAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGc                                                                                   <  4:290198/148‑1 (MQ=255)                                                         ggCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGcc                                                                                  <  6:187309/148‑1 (MQ=255)                                                            ttCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATg                                                                              >  8:343471/1‑149 (MQ=255)                                                                          tGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                                                         <  1:331560/76‑1 (MQ=255)                                                                          tGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGctc                                                                                                                                         >  2:331560/1‑76 (MQ=255)                                                                            gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                                                                <  8:223171/115‑1 (MQ=255)                                                                            gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCtgctgc                                                                                                >  7:223171/1‑115 (MQ=255)                                                                            gACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCAt                                                              >  1:405630/1‑149 (MQ=255)                                                                             aCCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATc                                                             >  2:134876/1‑149 (MQ=255)                                                                                  gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCggg                                                                                                                     >  1:201031/1‑88 (MQ=255)                                                                                  gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCggg                                                                                                                     <  2:201031/88‑1 (MQ=255)                                                                                  gCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGGCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgc                                                         <  1:134876/148‑1 (MQ=255)                                                                                   cGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgcgc                                                       <  2:405630/149‑1 (MQ=255)                                                                                    gggACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTgcgc                                                       >  6:268480/1‑148 (MQ=255)                                                                                       aCTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAg                                                    >  8:218767/1‑148 (MQ=255)                                                                                        cTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGaa                                                  >  6:319551/1‑149 (MQ=255)                                                                                           tACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGaa                                                  <  7:343471/146‑1 (MQ=255)                                                                                              ggcagagcgcgcacgcgcgtaagcggcaaggacccgcgggtcctccaggcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGc                                            >  4:164082‑M2/55‑149 (MQ=255)                                                                                              cGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGc                                            <  5:319551/149‑1 (MQ=255)                                                                                               gcagagcgcgcacgcgcgtaagcggcaaggacccgcgggtcctccaggcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAg                                                                                           <  6:118786‑M2/48‑1 (MQ=255)                                                                                               gcagagcgcgcacgcgcgtaagcggcaaggacccgcgggtcctccaggcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAg                                                                                           >  5:118786‑M2/54‑101 (MQ=255)                                                                                                tGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCt                                           >  6:45512/1‑148 (MQ=255)                                                                                                  aGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAg                                        <  7:218767/149‑1 (MQ=255)                                                                                                    GCGCGCCTGGAGGAGCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAgcg                                      <  7:346733‑M1/149‑1 (MQ=255)                                                                                                             gaggaCCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCta                             <  8:346733/149‑1 (MQ=255)                                                                                                              aggaCCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCtat                            <  5:268480/149‑1 (MQ=255)                                                                                                                gtaagcggcaaggacccgcgggtcctccaggcgcgcTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATaa                          <  3:164082‑M2/113‑1 (MQ=255)                                                                                                                   ccGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAacac                       >  3:81635/1‑149 (MQ=255)                                                                                                                   ccGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAacac                       >  2:350563/1‑149 (MQ=255)                                                                                                                             ttGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTAt             >  2:408982/1‑149 (MQ=255)                                                                                                                               gCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTAtt            <  5:45512/148‑1 (MQ=255)                                                                                                                                  gCTTACGCGCGTGCGCGCTCTGCCACTGAACAGCAGCCGGCAGCGCTCGCTACACTGATGACCCACGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGATGCAGAGCGCGACCTCTATAACACCTAAACCTAGTCGc         >  6:409348/1‑148 (MQ=255)                                                                                                                                        gcgcgTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTTCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGtct  >  1:408559/1‑149 (MQ=255)                                                                                                                                        gcgcgTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACctc                               <  6:131359/120‑1 (MQ=255)                                                                                                                                        gcgcgTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACctc                               >  5:131359/1‑120 (MQ=255)                                                                                                                                                    |                                                                                                                                         CAAGCGGTGGCTATGGAAGGGAAGGATGCCGCTGGTGAGCAGCCAAGAGGGGTTTCGGCTTCGACTTACGTGTTGGACCTGGCGGGACTGTACCGTGAGGCGCGCCTGGAGGACCCGCGGGTCCTTGCCGCTTACGCGCGTGCGCGCTCTGCCAGTGAACAGCAGCGGGCAGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCT  >  NC_002947/2020099‑2020382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.