| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2083276 | 37 (0.570) | 7 (0.120) | 7/242 | NT | 15.4% | intergenic (‑43/‑71) | PP_1861/PP_1862 | LysR family transcriptional regulator/membrane protein |
| ? | NC_002947 | = 2083292 | 43 (0.720) | intergenic (‑59/‑55) | PP_1861/PP_1862 | LysR family transcriptional regulator/membrane protein | |||||
GTGCTACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2083122‑2083276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtgcgctgGCGGGGAAACGCACAGCAGCGCACAATGGCTGTGCGTTTTTCGCAAAAGCAAGGCAGCCATGAGCCCCGATACCCTGACCGACCAATTGAGCCTGTTCCTCGATGTGCTGGAAACCGGCAGCTTTTCTGCCGCCGCCCGTC < NC_002947/2083292‑2083152 GTGCTACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGT > 5:27112/1‑149GTGCTACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTGCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGT < 6:303950/149‑1GTGCTACCGCAGACGGGGGCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGT < 6:123363/149‑1 TACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGC > 1:80284/1‑149 TACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGC > 4:78536/1‑149 CCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTG > 6:32197/1‑149 CGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGCA < 5:316238/149‑1 CGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGCACAA < 3:323710/149‑1 GGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGCACAAT < 3:390383/149‑1 CGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGCACAATGGC < 3:210088/149‑1 CGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGCACAATGG > 4:210088/1‑148 CTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGC < 7:153647/59‑1 CTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGGCGGGGAAACGCACAGCAGCGC > 8:153647/1‑59 TGCGCTGGCGGGGAAACGCACAGCAGCGCACAATGGCTGTGCGTTTTTCGCAAAAGCAAGGCAGCCATGAGCCCCGATACCCTGACCGACCAATTGAGCCTGTTCCTCGATGTGCTGGAAACCGGCAGCTTTTCTGCCGCCGCCCGTC < 1:12654/148‑1 GTGCTACCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2083122‑2083276‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtgcgctgGCGGGGAAACGCACAGCAGCGCACAATGGCTGTGCGTTTTTCGCAAAAGCAAGGCAGCCATGAGCCCCGATACCCTGACCGACCAATTGAGCCTGTTCCTCGATGTGCTGGAAACCGGCAGCTTTTCTGCCGCCGCCCGTC < NC_002947/2083292‑2083152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |