New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2083276	37 (0.570)	7 (0.120)	7/242	NT	15.4%	intergenic (‑43/‑71)	PP_1861/PP_1862	LysR family transcriptional regulator/membrane protein
	?	NC_002947	= 2083292	43 (0.720)					intergenic (‑59/‑55)	PP_1861/PP_1862	LysR family transcriptional regulator/membrane protein

CCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCG  >  NC_002947/2083128‑2083422                                                                                                                                                     |                                                                                                                                                   ccGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTG                                                                                                                                                    >  6:32197‑M1/1‑149 (MQ=255)      gACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCtgtg                                                                                                                                               >  7:197932/1‑149 (MQ=255)         ggggTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGt                                                                                                                                            >  3:203090/1‑149 (MQ=255)           ggTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGttt                                                                                                                                          <  2:210858/149‑1 (MQ=255)                  gggTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGc                                                                                                                                    >  1:390974/1‑148 (MQ=255)                        cGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgca                                                                                                                             <  5:316238‑M1/149‑24 (MQ=255)                         gACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgca                                                                                                                             <  1:12654‑M2/148‑8 (MQ=255)                           cGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgcacaa                                                                                                                          <  3:323710‑M1/149‑27 (MQ=255)                            gggCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgcacaat                                                                                                                         <  3:390383‑M1/149‑28 (MQ=255)                               cggcggcAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgcacaatggc                                                                                                                      <  3:210088‑M1/149‑31 (MQ=255)                               cggcggcAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgcacaatgg                                                                                                                       >  4:210088‑M1/1‑119 (MQ=255)                                        aaaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCt                                                                                                             >  6:172029/1‑149 (MQ=255)                                        aaaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCt                                                                                                             >  2:75195/1‑149 (MQ=255)                                         aaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTc                                                                                                            <  8:197932/149‑1 (MQ=255)                                             cTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCat                                                                                                        >  3:53096/1‑149 (MQ=255)                                                  ggTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTg                                                                                                   <  2:275475/149‑1 (MQ=255)                                                  ggTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTg                                                                                                   <  3:309579/149‑1 (MQ=255)                                                         aGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAgg                                                                                            <  5:172029/149‑1 (MQ=255)                                                             caTCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGa                                                                                        <  3:78536/149‑1 (MQ=255)                                                              aTCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGAc                                                                                       >  4:153713/1‑149 (MQ=255)                                                                 gAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAg                                                                                    <  3:153713/149‑1 (MQ=255)                                                                    gAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGcc                                                                                 <  1:75195/149‑1 (MQ=255)                                                                    gAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGcc                                                                                 >  1:67713/1‑149 (MQ=255)                                                                              aaTTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATc                                                                        <  2:390974/148‑1 (MQ=255)                                                                                        tcAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                             >  6:156269/1‑149 (MQ=255)                                                                                           gggTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGta                                                          <  4:53096/149‑1 (MQ=255)                                                                                                tCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATc                                                      <  6:27112/148‑1 (MQ=255)                                                                                                            gCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTCTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATAGTGCTGGGCGCAg                                         >  5:399497/1‑149 (MQ=255)                                                                                                                 cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgc                                                                                                                              <  7:153647‑M1/59‑23 (MQ=255)                                                                                                                 cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGgcggggaaacgcacagcagcgc                                                                                                                              >  8:153647‑M1/1‑37 (MQ=255)                                                                                                                 cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                             >  2:357619/1‑124 (MQ=255)                                                                                                                 cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                             <  1:357619/124‑1 (MQ=255)                                                                                                                      ttttGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCAc                               >  1:366205/1‑149 (MQ=255)                                                                                                                        ttGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCa                             >  5:209349/1‑149 (MQ=255)                                                                                                                          gCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCAt                            <  4:203090/148‑1 (MQ=255)                                                                                                                            gAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATggg                         >  7:382463/1‑149 (MQ=255)                                                                                                                             aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCGTAGGCACCATgggg                        >  4:275229/1‑149 (MQ=255)                                                                                                                             aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATgggg                        <  3:275229/149‑1 (MQ=255)                                                                                                                             aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGGATATCGTGCTGGGCGCAGCCATAGGCACCATgggg                        >  2:298130/1‑149 (MQ=255)                                                                                                                               aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                             <  4:27751/110‑1 (MQ=255)                                                                                                                               aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATgggggg                      >  7:119328/1‑149 (MQ=255)                                                                                                                               aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCGGATGATCGAGTGgttgtt                                                             >  3:27751/1‑110 (MQ=255)                                                                                                                                aaCGCACAGGCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATAGTTAGCATGCTCGCATTATTGGTACAGGCGGACGTGGCCCTGATGATCGTGTGGGTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGc                     <  5:32197/149‑1 (MQ=255)                                                                                                                                     acaGCCATTGTGCGCTGCTGTGCGTTTCCCNGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGtt                >  1:34419/1‑149 (MQ=255)                                                                                                                                     acaGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGtt                >  1:28319/1‑149 (MQ=255)                                                                                                                                       aGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTg              >  5:273595/1‑149 (MQ=255)                                                                                                                                       aGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTg              <  5:156269/149‑1 (MQ=255)                                                                                                                                        gCCATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccg             <  3:210088‑M2/149‑120 (MQ=255)                                                                                                                                         ccATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccg             >  4:210088‑M2/1‑29 (MQ=255)                                                                                                                                           aTTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgccc          <  3:390383‑M2/149‑123 (MQ=255)                                                                                                                                            ttGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgcccg         <  3:323710‑M2/149‑124 (MQ=255)                                                                                                                                               tgCGCTGgcggggaaacgcacagcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgcccgtc       <  1:12654‑M1/148‑142 (MQ=255)                                                                                                                                               tgCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgcccgtcg      <  5:316238‑M2/149‑127 (MQ=255)                                                                                                                                                gcgcTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaag                                                                                               <  7:153647‑M2/59‑38 (MQ=255)                                                                                                                                                gcgcTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaag                                                                                               >  8:153647‑M2/1‑22 (MQ=255)                                                                                                                                                  gctgctGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATtg        <  1:51385/144‑1 (MQ=255)                                                                                                                                                  gctgctGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATtg        >  2:51385/1‑144 (MQ=255)                                                                                                                                                   ctgctgTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCg  >  5:318573/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCGCAGACGGGGTCAGCGGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCG  >  NC_002947/2083128‑2083422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.