New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2083276	37 (0.570)	7 (0.120)	7/242	NT	15.4%	intergenic (‑43/‑71)	PP_1861/PP_1862	LysR family transcriptional regulator/membrane protein
	?	NC_002947	= 2083292	43 (0.720)					intergenic (‑59/‑55)	PP_1861/PP_1862	LysR family transcriptional regulator/membrane protein

GGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGCTGATTGCGATTCCG  >  NC_002947/2083145‑2083439                                                                                                                                                    |                                                                                                                                                    gggTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGc                                                                                                                                                     >  1:390974/1‑148 (MQ=255)        gACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgca                                                                                                                                              <  1:12654‑M2/148‑8 (MQ=255)                       aaaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCt                                                                                                                              >  6:172029/1‑149 (MQ=255)                       aaaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCt                                                                                                                              >  2:75195/1‑149 (MQ=255)                        aaaGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTc                                                                                                                             <  8:197932/149‑1 (MQ=255)                            cTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCat                                                                                                                         >  3:53096/1‑149 (MQ=255)                                 ggTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTg                                                                                                                    <  2:275475/149‑1 (MQ=255)                                 ggTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTg                                                                                                                    <  3:309579/149‑1 (MQ=255)                                        aGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAgg                                                                                                             <  5:172029/149‑1 (MQ=255)                                            caTCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGa                                                                                                         <  3:78536/149‑1 (MQ=255)                                             aTCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGAc                                                                                                        >  4:153713/1‑149 (MQ=255)                                                gAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAg                                                                                                     <  3:153713/149‑1 (MQ=255)                                                   gAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGcc                                                                                                  >  1:67713/1‑149 (MQ=255)                                                   gAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGcc                                                                                                  <  1:75195/149‑1 (MQ=255)                                                             aaTTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATc                                                                                         <  2:390974/148‑1 (MQ=255)                                                                       tcAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                                              >  6:156269/1‑149 (MQ=255)                                                                          gggTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGta                                                                           <  4:53096/149‑1 (MQ=255)                                                                               tCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATc                                                                       <  6:27112/148‑1 (MQ=255)                                                                                           gCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTCTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATAGTGCTGGGCGCAg                                                          >  5:399497/1‑149 (MQ=255)                                                                                                cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                                              >  2:357619/1‑124 (MQ=255)                                                                                                cTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                                              <  1:357619/124‑1 (MQ=255)                                                                                                     ttttGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCAc                                                >  1:366205/1‑149 (MQ=255)                                                                                                       ttGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCa                                              >  5:209349/1‑149 (MQ=255)                                                                                                         gCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCAt                                             <  4:203090/148‑1 (MQ=255)                                                                                                           gAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATggg                                          >  7:382463/1‑149 (MQ=255)                                                                                                            aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCGTAGGCACCATgggg                                         >  4:275229/1‑149 (MQ=255)                                                                                                            aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATgggg                                         <  3:275229/149‑1 (MQ=255)                                                                                                            aaaaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGGATATCGTGCTGGGCGCAGCCATAGGCACCATgggg                                         >  2:298130/1‑149 (MQ=255)                                                                                                              aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGgttgtt                                                                              <  4:27751/110‑1 (MQ=255)                                                                                                              aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATgggggg                                       >  7:119328/1‑149 (MQ=255)                                                                                                              aaaCGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCGGATGATCGAGTGgttgtt                                                                              >  3:27751/1‑110 (MQ=255)                                                                                                               aaCGCACAGGCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATAGTTAGCATGCTCGCATTATTGGTACAGGCGGACGTGGCCCTGATGATCGTGTGGGTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGc                                      <  5:32197/149‑1 (MQ=255)                                                                                                                    acaGCCATTGTGCGCTGCTGTGCGTTTCCCNGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGtt                                 >  1:34419/1‑149 (MQ=255)                                                                                                                    acaGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGtt                                 >  1:28319/1‑149 (MQ=255)                                                                                                                      aGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTg                               <  5:156269/149‑1 (MQ=255)                                                                                                                      aGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTg                               >  5:273595/1‑149 (MQ=255)                                                                                                                       gCCATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccg                              <  3:210088‑M2/149‑120 (MQ=255)                                                                                                                        ccATTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccg                              >  4:210088‑M2/1‑29 (MQ=255)                                                                                                                          aTTGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgccc                           <  3:390383‑M2/149‑123 (MQ=255)                                                                                                                           ttGTGCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgcccg                          <  3:323710‑M2/149‑124 (MQ=255)                                                                                                                              tgCGCTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaaggcagccatgagccccgataccctgaccgaccaattgagcctgttcctcgatgtgctggaaaccggcagcttttctgccgccgcccgtcg                       <  5:316238‑M2/149‑127 (MQ=255)                                                                                                                               gcgcTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaag                                                                                                                <  7:153647‑M2/59‑38 (MQ=255)                                                                                                                               gcgcTGCTGTGCGTTTCCCCGCcagcgcacaatggctgtgcgtttttcgcaaaagcaag                                                                                                                >  8:153647‑M2/1‑22 (MQ=255)                                                                                                                                 gctgctGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATtg                         >  2:51385/1‑144 (MQ=255)                                                                                                                                 gctgctGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATtg                         <  1:51385/144‑1 (MQ=255)                                                                                                                                  ctgctgTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCg                   >  5:318573/1‑149 (MQ=255)                                                                                                                                     ctgTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCgg                  <  2:67713/147‑1 (MQ=255)                                                                                                                                     ctgTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGc                >  6:410373/1‑149 (MQ=255)                                                                                                                                      tgtgCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCt                                                      >  5:284351/1‑110 (MQ=255)                                                                                                                                      tgtgCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCt                                                      <  6:284351/110‑1 (MQ=255)                                                                                                                                            tttCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGCTGATTGc         >  8:25055/1‑149 (MQ=255)                                                                                                                                             ttCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGCTGATTGc         >  4:103278/1‑148 (MQ=255)                                                                                                                                                   gCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGCTGATTGCGATTCCg  >  3:345496/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGGTGGCGACGGGCGGCGGCAGAAAAGCTGCCGGTTTCCAGCACATCGAGGAACAGGCTCAATTGGTCGGTCAGGGTATCGGGGCTCATGGCTGCCTTGCTTTTGCGAAAAACGCACAGCCATTGTGCGCTGCTGTGCGTTTCCCCGCCAGCGCACAATCGTTAGCATGCTCGCATTATTGGTACAGGCGGACGAGGCCCTGATGATCGAGTGGTTGTTGTATATCGTGCTGGGCGCAGCCCTAGGCACCATGGGGGGCTTGTTTGGCATTGGTGGCGGGCTGATTGCGATTCCG  >  NC_002947/2083145‑2083439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.