New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2084301	53 (0.810)	3 (0.050)	3/250	NT	5.8%	coding (676/852 nt)	PP_1863	LysR family transcriptional regulator
	?	NC_002947	= 2084335	47 (0.760)					coding (642/852 nt)	PP_1863	LysR family transcriptional regulator

CTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2084189‑2084301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcccAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGT  <  NC_002947/2084335‑2084188                                                                                                                                                                                                                                                                       CTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGTAGCTGCGCGGTCACTGCCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGG                                                                                                                  <  3:220972/149‑1                  ATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCA                                                                                                           >  7:150006/1‑139                  ATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCA                                                                                                           <  8:150006/139‑1                                                                                                               CCCAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCA    <  2:304915/149‑1                                                                                                                 CAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGTAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGT  <  7:176437/149‑1                                                                                                                                                                                                                                                                       CTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2084189‑2084301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcccAAGCCTGGCGGCGATCTTTGCCATCGTCACCGCCGGGCTGGCAGTGACCGCGCAGCTGCAGAGCCTGATCGGGGGCAACATCCGCATTCTGGGTGAGAGCGAAGGGCTGCCGCAGTTGCCCATGGCCAATGTAATGCTGGTGCGCAGT  <  NC_002947/2084335‑2084188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.