New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 208430153 (0.810)3 (0.050) 3/250 NT 5.8% coding (676/852 nt) PP_1863 LysR family transcriptional regulator
?NC_002947 = 2084335 47 (0.760)coding (642/852 nt) PP_1863 LysR family transcriptional regulator

ACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCTTCTGCCGCGGC  >  NC_002947/2084188‑2084475
                                                                                                                                                     |                                                                                                                                              
aCTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTACCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTg                                                                                                                                               <  7:176437‑M2/149‑2 (MQ=255)
  tGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTggg                                                                                                                                             <  2:304915‑M2/149‑4 (MQ=255)
       aCCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGgt                                                                                                                                        <  2:409126/149‑1 (MQ=255)
       aCCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGgt                                                                                                                                        <  5:20099/149‑1 (MQ=255)
           gCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAg                                                                                                                                    >  5:23866/1‑149 (MQ=255)
             aTTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGc                                                                                                                                  <  6:405598/149‑1 (MQ=255)
                aCATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCaa                                                                                                                                <  5:138768/148‑1 (MQ=255)
                  aTTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATAc                                                                                                                             >  2:383325/1‑149 (MQ=255)
                        cATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAAt                                                                                                                      >  2:217732/1‑149 (MQ=255)
                             gCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATg                                                                                                                 <  4:170278/149‑1 (MQ=255)
                                     ggCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGc                                                                                                         <  5:105191/149‑1 (MQ=255)
                                      gCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGcc                                                                                                        >  8:25458/1‑149 (MQ=255)
                                            cTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAgg                                                                                                                                   >  7:228353/1‑117 (MQ=255)
                                            cTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAgg                                                                                                                                   <  8:228353/117‑1 (MQ=255)
                                             ttCGCTCTCACCCAGAATGCGGATATTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAgcg                                                                                                 >  2:31202/1‑149 (MQ=255)
                                                gCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTACCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCAt                                                                                              <  8:176437/149‑1 (MQ=255)
                                                  tctcACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCAGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCAtt                                                                                             >  1:293096/1‑149 (MQ=255)
                                                  tctcACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTg                                                                                            >  4:159573/1‑149 (MQ=255)
                                                      aCCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCTGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGGTGCCCTGTGCCTCCAGCGCATTGCAg                                                                                         <  1:217807/148‑1 (MQ=255)
                                                      aCCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAgg                                                                                        >  2:371573/1‑149 (MQ=255)
                                                        ccAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGATCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTc                                                                                      >  1:289002/1‑149 (MQ=255)
                                                           gAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAg                                                                                   <  6:23866/149‑1 (MQ=255)
                                                                cGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGgcgc                                                                               <  3:159573/148‑1 (MQ=255)
                                                                cGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGgcgc                                                                               <  1:360140/148‑1 (MQ=255)
                                                                 ggATGTTGCCCCCGATCAGGCTCTGCAGCTGCGGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAgg                                                                                        >  1:48701/1‑139 (MQ=255)
                                                                 ggATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAgg                                                                                        <  2:48701/138‑1 (MQ=255)
                                                                  gATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGa                                                                             >  5:272538/1‑148 (MQ=255)
                                                                  gATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGAc                                                                            <  1:383325/149‑1 (MQ=255)
                                                                      ttGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGaa                                                                        <  2:289002/149‑1 (MQ=255)
                                                                       tGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGaa                                                                        <  7:25458/148‑1 (MQ=255)
                                                                          ccccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAg                                                                    >  7:129914/1‑149 (MQ=255)
                                                                          ccccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGACCGGCGGTGACGATGGCAAAGATCGCCGCCAGTCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAg                                                                    >  5:282460/1‑149 (MQ=255)
                                                                           cccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACGGAAGCAGt                                                                   >  5:359347/1‑149 (MQ=255)
                                                                            ccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAACTCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGt                                                                   <  1:304915/149‑1 (MQ=255)
                                                                            ccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGgc                                                                                 <  6:22615/134‑1 (MQ=255)
                                                                            ccGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGgc                                                                                 >  5:22615/1‑134 (MQ=255)
                                                                                           aGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGc                                                  <  2:293096/149‑1 (MQ=255)
                                                                                                  gcgGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGgt                                                              >  8:256806/1‑131 (MQ=255)
                                                                                                  atcgTCACCGCCGGGCTGGCAGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGaacaac                                                    <  1:52476/138‑1 (MQ=255)
                                                                                                  atcgTCACCGCCGGGCTGGCAGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGaacaac                                                    >  2:52476/4‑141 (MQ=255)
                                                                                                   cgGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCgg                                            >  1:134395/1‑148 (MQ=255)
                                                                                                          tGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTgggctggcagtgaccgcgcagctgcagagcctgatcgggggcaacatccgcattctgggtgagagcgaagggctgccgcagttgcccatggccaat                                                >  7:150006‑M2/1‑43 (MQ=255)
                                                                                                          tGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTgggctggcagtgaccgcgcagctgcagagcctgatcgggggcaacatccgcattctgggtgagagcgaagggctgccgcagttgcccatggccaat                                                <  8:150006‑M2/139‑97 (MQ=255)
                                                                                                           gCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCACAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGcc                                    >  1:266625/1‑149 (MQ=255)
                                                                                                            ccAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGcc                                    <  1:217732/147‑1 (MQ=255)
                                                                                                            ccAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGc                                  <  6:272538/149‑1 (MQ=255)
                                                                                                             cAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACGGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCt                                 <  6:359347/149‑1 (MQ=255)
                                                                                                             cAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGCTGTTGAACAACGCCACCGGCATCGGCCGc                                  <  1:31202/149‑1 (MQ=255)
                                                                                                                 ccGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTgggctggcagtgaccgcgcagctacagagcctgatcgggggcaacatccgcattctgggtgagagcgaagggctgccgcagttgcccatggccaatgtaatgctggtgcgcag                               <  3:220972‑M2/149‑114 (MQ=255)
                                                                                                                   ggcggTGACGAGGGCAAAGATCGCCGCGAGGCTTGGGCTGGGGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCgt                           <  6:282460/149‑1 (MQ=255)
                                                                                                                             aTGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCaa                   >  1:194784/1‑147 (MQ=255)
                                                                                                                                 cAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCt             <  2:134395/149‑1 (MQ=255)
                                                                                                                                    aGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCTTCt          >  5:101972/1‑149 (MQ=255)
                                                                                                                                    aGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCTTCt          <  6:101972/149‑1 (MQ=255)
                                                                                                                                            gccAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCTTCTGCCGCGGc  >  6:139385/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                              
ACTGCGCACCAGCATTACATTGGCCATGGGCAACTGCGGCAGCCCTTCGCTCTCACCCAGAATGCGGATGTTGCCCCCGATCAGGCTCTGCAGCTGCGCGGTCACTGCCAGCCCGGCGGTGACGATGGCAAAGATCGCCGCCAGGCTTGGGCTGGTGTAGGCAATACGGTAATCGATGCCCTGTGCCTCCAGCGCATTGCAGGTCCAGGCGCGACAGAAGCAGTCGGTGTTGAACAACGCCACCGGCATCGGCCGCTGTTCGTGTGGGCAAAAGCCTTCTGCCGCGGC  >  NC_002947/2084188‑2084475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.