| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2412070 | 47 (0.720) | 4 (0.070) | 3/246 | NT | 7.3% | coding (399/1065 nt) | rlmM | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM |
| ? | NC_002947 | = 2412116 | 58 (0.960) | coding (445/1065 nt) | rlmM | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM | |||||
GACCGCATCAGCGTACTGCTGGCGCAGTTGGCTGACTTCCCGGTGTTCGGTAGCCTTTGGCTGGAGGTGCTGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2411915‑2412070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccgcTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGCACCTCCAGCCAAA < NC_002947/2412116‑2411970 GACCGCATCAGCGTACTGCTGGCGCAGTTGGCTGACTTCCCGGTGTTCGGTAGCCTTTGGCTGGAGGTGCTGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGC > 2:33885/1‑149 CGCATCAGCGTACTGCTGGCGCAGTTGGCTGACTTCCCGGTGTTCGGTAGCCTTTGGCTGGAGGTGCTGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGG > 4:279804/1‑149 CTTTGGCTGGAGGTGCTGGACAGCAACGGAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGG > 1:230070/1‑149 CTGGAGGTGCTGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCG < 2:230070/149‑1 TGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCG < 5:249179/139‑1 TGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCG > 6:249179/1‑139 GCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGCACCTCCA < 1:254587/146‑1 GCCGCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGCACCTCCA > 2:254587/1‑146 GCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGCACCTCCAGCCAAA < 3:274793/149‑1 GCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGC > 1:45072/1‑136 GCTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGC < 2:45072/136‑1 GACCGCATCAGCGTACTGCTGGCGCAGTTGGCTGACTTCCCGGTGTTCGGTAGCCTTTGGCTGGAGGTGCTGGACAGCAACGAAGGCAAGGAATTGTCCACCTTCTGCCGAAAGTTCGAAGTGCCGTTGCGCAAGGCCCTGGAGAAGGCCGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2411915‑2412070‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggccgcTGATGAAGGTCAGCAGCAAGCGTGGGCGACCGGGGTCGTCGACCAGGCGGCCGGCCTTCTCCAGGGCCTTGCGCAACGGCACTTCGAACTTTCGGCAGAAGGTGGACAATTCCTTGCCTTCGTTGCTGTCCAGCACCTCCAGCCAAA < NC_002947/2412116‑2411970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |