| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2852056 = | 62 (0.950) | 5 (0.080) | 4/250 | NT | 7.5% | coding (486/519 nt) | PP_5531 | hypothetical protein |
| ? | NC_002947 | 2852100 = | 65 (1.060) | intergenic (+11/+194) | PP_5531/PP_2505 | hypothetical protein/GAF domain/GGDEF domain‑containing protein | |||||
ATCGCCGCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2852209‑2852056‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcacgAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGGCGATCAGTTGAAAGCGAGCTGATCAGGCAAATTGGTAACTCA > NC_002947/2852100‑2852247 ATCGCCGCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCT < 8:306513/149‑1ATCGCCGCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGC < 1:395813/148‑1ATCGCCGCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGC < 6:117759/148‑1 GCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCAC < 7:125568/147‑1 GCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCAC > 8:125568/1‑147 CGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCAC > 7:211651/1‑117 CGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCAC < 8:211651/117‑1 CCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTT > 7:20204/1‑142 CCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTT < 8:20204/142‑1 CTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGG > 4:263217/1‑149 CTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGG > 4:84250/1‑149 TCGCAGATAGGCGAACATGTGCTGCACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGGCGATCAGTTGAAA < 3:263217/147‑1 CACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGGCGATCAGTTGAAAGCGAGCTGATCAGGCAAATTGGTAAC > 7:315486/1‑149 CACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGG < 3:53819/110‑1 CACGAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGG > 4:53819/1‑110 GAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGGCGATCAGTTGAAAGCGAGCTGATCAGGCAAATTGGTAACTCA < 1:204841/149‑1 ATCGCCGCCCCTTATTGCAACCAGGGGCGGGAATGGCGTCCACATCGCTGGACAAACAAACTGCGACCGCCCCGAGTGGCGAGCGCGGCACAGTTGCTTAGCGCCCACCTCGTGCAGGATTCACTGTCGCAGATAGGCGAACATGTGCTGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2852209‑2852056‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcacgAGGTGGGCGCTAAGCAACTGTGCCGCGCTCGCCACTCGGGGCGGTCGCAGTTTGTTTGTCCAGCGATGTGGACGCCATTCCCGCCCCTGGTTGCAATAAGGGGCGGCGATCAGTTGAAAGCGAGCTGATCAGGCAAATTGGTAACTCA > NC_002947/2852100‑2852247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |