New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3394320	49 (0.750)	4 (0.070)	4/244	NT	8.9%	coding (87/900 nt)	PP_2997	protein CnmA
	?	NC_002947	= 3394357	37 (0.620)					coding (50/900 nt)	PP_2997	protein CnmA

CCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3394188‑3394320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgttcgACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGCGCCTGCGCGAGCAATTGAACGACCCGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCC  <  NC_002947/3394357‑3394216                                                                                                                                                                                                                                                                                     CCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGACGTGCTGTATCAATG                                                                                                                                >  1:147564/1‑149                   GCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGC                                                                                                              >  5:106062/1‑149                           TAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAAC                                                                                                      <  6:106062/149‑1                                GCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTG                                                                                                 <  2:147564/149‑1                                                                                                                            CAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGCGCCTGCGCGAGCAATTGAACGACCCGCTGTTCGTGCGCACGCCAGGCGGCATGGC     >  2:313018/1‑149                                                                                                                            CAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGC                                                            >  5:199032/1‑94                                                                                                                            CAGCTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGC                                                            <  6:199032/94‑1                                                                                                                               CTGTTCGACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGCGCCTGCGCGAGCAATTGAACGACCCGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCC  >  1:51867/1‑149                                                                                                                                                                                                                                                                                     CCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3394188‑3394320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgttcgACGTGCTGTATCAATGCCGCAGCGTGACCCGCGCCGCCGAACAGCTGGGGCAGAGCCAGCCGACCATCAGCATCTGGCTGGCGCGCCTGCGCGAGCAATTGAACGACCCGCTGTTCGTGCGCACGCCAGGCGGCATGGCCCC  <  NC_002947/3394357‑3394216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.