New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3394320	49 (0.750)	4 (0.070)	4/244	NT	8.9%	coding (87/900 nt)	PP_2997	protein CnmA
	?	NC_002947	= 3394357	37 (0.620)					coding (50/900 nt)	PP_2997	protein CnmA

CGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGCGACGT  >  NC_002947/3394209‑3394501                                                                                                                                                      |                                                                                                                                                 cgGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGt                                                                                                                                                  <  4:299257/149‑1 (MQ=255)        ggggCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacag                                                                                                                                           >  1:51867‑M2/1‑142 (MQ=255)           gCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctg                                                                                                                                        >  2:313018‑M2/1‑139 (MQ=255)                gccgccTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTgcag                                                                                                                                     >  8:77189/1‑147 (MQ=255)                   gccTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCt                                                                                                                                >  4:44072/1‑149 (MQ=255)                     cTGGCCTGCGGACGAAGAGCGGGTCGTTCAATTGCTCGCGCAGGGGCGCCAGCCAGATCCTGATGGCGGGCTGGCTCAGCCGCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGGACGTCGAACAGCAGCAGCAGCTTg                                                                                                                              <  7:382206/149‑1 (MQ=255)                       ggCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTggg                                                                                                                            >  1:296236/1‑149 (MQ=255)                         cGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGtt                                                                                                                          <  3:44072/149‑1 (MQ=255)                                 cGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAgg                                                                                                                  <  5:250069/149‑1 (MQ=255)                                 cGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAgg                                                                                                                  <  5:384938/149‑1 (MQ=255)                                           gTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAggg                                                                                                        <  5:239504/149‑1 (MQ=255)                                           gTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAggg                                                                                                        <  2:296236/149‑1 (MQ=255)                                              gTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAg                                                                                                     >  5:373935/1‑149 (MQ=255)                                                  aaTTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCat                                                                                                 >  3:209957/1‑149 (MQ=255)                                                  aaTTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCat                                                                                                 >  2:200139/1‑149 (MQ=255)                                                   aTTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCatt                                                                                                >  3:133544/1‑149 (MQ=255)                                                   aTTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCatt                                                                                                <  8:52119/149‑1 (MQ=255)                                                    ttGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCatta                                                                                               <  2:267284/149‑1 (MQ=255)                                                       cTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCattatt                                                                                             >  7:165316/1‑148 (MQ=255)                                                       cTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCattatt                                                                                             <  4:209957/148‑1 (MQ=255)                                                          gcgcAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAg                                                                                                          <  2:8266/132‑1 (MQ=255)                                                          gcgcAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAg                                                                                                          >  1:8266/1‑132 (MQ=255)                                                          gcgcAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGaaa                                                                                         >  7:293956/1‑149 (MQ=255)                                                          gcgcAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGaaa                                                                                         >  1:296081/1‑149 (MQ=255)                                                          gcgcAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGaa                                                                                          <  7:77189/148‑1 (MQ=255)                                                              aGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATtct                                                                                     <  8:165316/149‑1 (MQ=255)                                                               ggCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATtctc                                                                                    <  8:140729/149‑1 (MQ=255)                                                                  gcgcCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctg                                                                                                                                        <  6:199032‑M2/94‑11 (MQ=255)                                                                  gcgcCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctg                                                                                                                                        >  5:199032‑M2/1‑84 (MQ=255)                                                                    gccagccaGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAg                                                                               >  4:334651/1‑149 (MQ=255)                                                                                  gATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCa                                                                 >  6:360813/1‑149 (MQ=255)                                                                                    tGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCAtt                                                               <  7:25037/149‑1 (MQ=255)                                                                                    tGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCAtt                                                               <  4:133544/149‑1 (MQ=255)                                                                                          gctggctCTGCCCCAGCTGTTCGGCGGGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAg                                                                                                          >  1:218118/1‑101 (MQ=255)                                                                                           ctggctCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTAt                                                                         >  2:221421/1‑132 (MQ=255)                                                                                           ctggctCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTAt                                                                         <  1:221421/132‑1 (MQ=255)                                                                                                    ccccAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAAt                                                  <  8:293956/146‑1 (MQ=255)                                                                                                     tccttgtGTTCGGG‑TGCGGGTGTCTCGCTGCGGCATTGTTACAGCATGTCGTACAGTTGCATCAGCTTGGGTTCGGGCAGGGCCTCCATGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATaaa                                               <  8:254006/142‑1 (MQ=255)                                                                                                     cccAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATAGAGGGCATTGTATAGCGCAAATAAAc                                              >  7:80339/1‑149 (MQ=255)                                                                                                       cAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctggggcagagccagccgaccatcagcatctggctggcgcgcctgcgcgagcaattgaacgacccgctgttcgtgcgcacgccaggcggcatggc                                            <  2:147564‑M2/149‑103 (MQ=255)                                                                                                            gTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctggggcagagccagccgaccatcagcatctggctggcgcgcctgcgcgagcaattgaacgacccgctgttcgtgcgcacgccaggcggcatggccccta                                       <  6:106062‑M2/149‑108 (MQ=255)                                                                                                                    ggcgCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAgg                                <  5:26669/149‑1 (MQ=255)                                                                                                                     gcgcGGGTCACGCTGCGGCATTGATACAGCACGTcgaacagctggggcagagccagccgaccatcagcatctggctggcgcgcctgcgcgagcaattgaacgacccgctgttcgtgcgcacgccaggcggcatggcccctaccccgcgc                               >  5:106062‑M2/1‑34 (MQ=255)                                                                                                                              aCGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCaaa                      <  5:360813/149‑1 (MQ=255)                                                                                                                                       cATTGATACAGCACGTcgaacagctggggcagagccagccgaccatcagcatctggctggcgcgcctgcgcgagcaattgaacgacccgctgttcgtgcgcacgccaggcggcatggcccctaccccgcgcgccgatcagctgataggg             >  1:147564‑M2/1‑16 (MQ=255)                                                                                                                                             tACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTCTATTGAGTGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGc       <  2:296081/149‑1 (MQ=255)                                                                                                                                              aCAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGc       >  5:364241/1‑148 (MQ=255)                                                                                                                                                     gTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGCGACGt  <  7:91591/146‑1 (MQ=255)                                                                                                                                                     gTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGCGACGt  >  8:91591/1‑146 (MQ=255)                                                                                                                                                      |                                                                                                                                                 CGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTCGCGCAGGCGCGCCAGCCAGATGCTGATGGTCGGCTGGCTCTGCCCCAGCTGTTCGGC‑GGCGCGGGTCACGCTGCGGCATTGATACAGCACGTCGAACAGCTGCAGCAGCTTGGGTTCGGGCAGGGCCTCCAGGGTAGTCATTATTGAAATTCTCAATAGCTGTATTGAGGGCATTGTATAGCGCAAATAAACCCCGCTGCATAAGGTGATCGCAAATCACAGGAGGTCTGCGACGT  >  NC_002947/3394209‑3394501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.