New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3490531	64 (0.980)	4 (0.060)	4/254	NT	6.4%	coding (860/2637 nt)	clpV	protein ClpV1
	?	NC_002947	= 3490575	55 (0.880)					coding (816/2637 nt)	clpV	protein ClpV1

CCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3490382‑3490531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGC  <  NC_002947/3490575‑3490431                                                                                                                                                                                                                                                                                                         CCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCC                                                                                                                                                    <  3:185224/149‑1                                                     GATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGA                                                                                                <  3:70375/149‑1                                                         AGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTT                                                                                             <  5:296108/148‑1                                                           GGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGC                                                                                                  >  5:215517/1‑141                                                           GGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGC                                                                                                  <  6:215517/141‑1                                                                                                                                                   CCCTGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGC  >  1:143306/1‑149                                                                                                                                                                                                                                                                                                         CCGGCTTGAGCAGGTTGGCGGCATCGTTCTGCCCGGCCTGGCCGCCGGAGCCGATCAGGGTGTGGGCTTCGTCGATGAACAGGATGATCGGGTGCAGGCTGCGCTTGACCTCTTCGATCACAGCCTTGAGGCGGTTCTCGAACTCGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3490382‑3490531 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctGCACACCCTCGACCTGGGCCTGTTACAGGCCGGCGCCGGGGTCAAGGGCGAGTTCGAGAACCGCCTCAAGGCTGTGATCGAAGAGGTCAAGCGCAGCCTGCACCCGATCATCCTGTTCATCGACGAAGCCCACACCCTGATCGGC  <  NC_002947/3490575‑3490431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.