New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3815726	62 (0.950)	4 (0.060)	4/252	NT	6.3%	coding (394/1260 nt)	PP_3371	sensor histidine kinase
	?	NC_002947	= 3815758	60 (0.970)					coding (362/1260 nt)	PP_3371	sensor histidine kinase

GACGATTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3815577‑3815726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgcGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGTTTCGATGTGCGGGTC  <  NC_002947/3815758‑3815613                                                                                                                                                                                                                                                                                                          GACGATTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCG                                                                                                                                                     >  5:306992/1‑149                      GCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCGCCCACGCAACCTTGGCCCG                                                                                                                                >  6:393441/1‑149                                              ATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGC                                                                                                        <  5:393441/149‑1                                                  AAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATG                                                                                                           <  1:84372/142‑1                                                  AAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATG                                                                                                           >  2:84372/1‑142                                                                                                                                                 CACCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGT                 >  1:28810/1‑137                                                                                                                                                 CACCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGT                 <  2:28810/137‑1                                                                                                                                                   CCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCAT                                       <  3:403846/113‑1                                                                                                                                                   CCGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCAT                                       >  4:403846/1‑113                                                                                                                                                    CGCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGTTTCGATGTGCGGGTC  <  1:267948/149‑1                                                                                                                                                     GCGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGTTTCGATGTGCGGGT   >  1:128670/1‑147                                                                                                                                                                                                                                                                                                          GACGATTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3815577‑3815726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccgcGCCCACGCAACCTTGGCCCGTTCGTGACTGGGGCGGTGATGAGCGCGCTGTTCGCGCTGTTGTGCAGCTTTTACCTGACCCGGCCGCTGACCTGGCTGCGCGAGGCCATGGGCCAGGTTGCCCAAGGCCGTTTCGATGTGCGGGTC  <  NC_002947/3815758‑3815613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.