New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3815726	62 (0.950)	4 (0.060)	4/252	NT	6.3%	coding (394/1260 nt)	PP_3371	sensor histidine kinase
	?	NC_002947	= 3815758	60 (0.970)					coding (362/1260 nt)	PP_3371	sensor histidine kinase

GATTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCA  >  NC_002947/3815580‑3815872                                                                                                                                                   |                                                                                                                                                   gaTTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGccc                                                                                                                                                  >  4:263054/1‑149 (MQ=255)      cGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGt                                                                                                                                              <  3:162705/148‑1 (MQ=255)              cgcTTGCCGAGGCGCGGCCTGACGCGCTCATCGAAACGGCCTTGTGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGTGTCAGGTAAAAGCTGCACATCAGCGCGAACAGCGCGCTCATGACCGCGCCAGTCACGAACgg                                                                                                                                     <  6:37748/149‑1 (MQ=255)                   gCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCgcccacgcaaccttggcccg                                                                                                                                >  6:393441‑M1/1‑129 (MQ=255)                    cccAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAg                                                                                                                               <  6:306992/149‑1 (MQ=255)                     ccAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAgg                                                                                                                              >  5:147582/1‑149 (MQ=255)                     ccAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAgg                                                                                                                              >  5:223951/1‑149 (MQ=255)                       aGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGtt                                                                                                                            >  2:128670/1‑149 (MQ=255)                             ggCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTgg                                                                                                                      <  7:379102/149‑1 (MQ=255)                                  gACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcg                                                                                                                 <  1:267948‑M2/149‑4 (MQ=255)                                   aCCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgc                                                                                                                  >  1:128670‑M2/1‑145 (MQ=255)                                         acaTCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGt                                                                                                                        <  3:58176/135‑1 (MQ=255)                                         acaTCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGt                                                                                                                        >  4:58176/1‑135 (MQ=255)                                           aTCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCgcccacgcaaccttggcccgttcgtgactggggcggtgatgagc                                                                                                        <  5:393441‑M1/149‑45 (MQ=255)                                           aTCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATAc                                                                                                        >  5:369435/1‑149 (MQ=255)                                            tCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATAcc                                                                                                       >  2:217471/1‑149 (MQ=255)                                             cGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCAc                                                                                                                                           >  8:177253/1‑112 (MQ=255)                                             cGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCAc                                                                                                                                           <  7:172039/112‑1 (MQ=255)                                             cGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCAc                                                                                                                                           >  8:172039/1‑112 (MQ=255)                                             cGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCAc                                                                                                                                           <  7:177253/112‑1 (MQ=255)                                               aaaCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCgcccacgcaaccttggcccgttcgtgactggggcggtgatg                                                                                                           <  1:84372‑M1/142‑42 (MQ=255)                                               aaaCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCgcccacgcaaccttggcccgttcgtgactggggcggtgatg                                                                                                           >  2:84372‑M1/1‑101 (MQ=255)                                                 aCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtg                                                                                                              >  1:28810‑M2/1‑131 (MQ=255)                                                 aCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtg                                                                                                              <  2:28810‑M2/137‑7 (MQ=255)                                                   ggCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACgg                                                                                                <  7:45480/149‑1 (MQ=255)                                                     ccTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGt                                                                                              >  8:381391/1‑149 (MQ=255)                                                      cTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTg                                                                                             <  1:65479/149‑1 (MQ=255)                                                       ttGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCTGTGCCATACCGACACgg                                                                                                <  7:121147/145‑1 (MQ=255)                                                       ttGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGACGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGCCCAAGGTTGCGTGGGCGCGGTGCAATACCGACACgggag                                                                                             >  8:121147/1‑146 (MQ=255)                                                         gggCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGc                                                                                           >  1:137643/1‑148 (MQ=255)                                                             aaCCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCAcc                                                                                       >  8:189930/1‑148 (MQ=255)                                                             aaCCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCg                                                                                      <  7:381391/149‑1 (MQ=255)                                                                     ccATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAgcgc                                                                                >  6:281973/1‑147 (MQ=255)                                                                     ccATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAgcgc                                                                                <  5:281973/147‑1 (MQ=255)                                                                      cATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCgca                                                                             <  1:217471/149‑1 (MQ=255)                                                                       aTGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcgg                                                                                                                >  4:403846‑M2/1‑109 (MQ=255)                                                                       aTGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcgg                                                                                                                <  3:403846‑M2/113‑5 (MQ=255)                                                                            cTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCa                                                                       <  6:369435/149‑1 (MQ=255)                                                                               gcgcAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTg                                                                    <  6:223951/149‑1 (MQ=255)                                                                                     ccAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGggcggc                                                              >  6:145009/1‑149 (MQ=255)                                                                                         gTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGt                                                           >  8:96197/1‑148 (MQ=255)                                                                                              cGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGTCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGt                                                     >  4:81001/1‑149 (MQ=255)                                                                                                gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGt                                                                     <  6:230917/131‑1 (MQ=255)                                                                                                gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGt                                                                     >  5:230917/1‑131 (MQ=255)                                                                                                gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGcc                                                             <  8:206791/139‑1 (MQ=255)                                                                                                gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGcc                                                             >  7:206791/1‑139 (MQ=255)                                                                                                     gTCAGGT‑AAAGCTGCACAACAGCGCGAACAGCGCGCTCATCTCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGt                                             >  6:53011/1‑149 (MQ=255)                                                                                                      tCAGGTAAAAGCTGCACAACAGCGCAAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGc                                                >  2:318745/1‑146 (MQ=255)                                                                                                      tCAGGTAAAAGCTGCACAACAGCGCAAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGc                                                <  1:318745/146‑1 (MQ=255)                                                                                                        aGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGc                                           <  5:145009/149‑1 (MQ=255)                                                                                                          gTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCt                                         >  8:200037/1‑149 (MQ=255)                                                                                                             aaaGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGTCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGc                                       <  3:81001/148‑1 (MQ=255)                                                                                                               aGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCg                                    <  3:263054/149‑1 (MQ=255)                                                                                                                    cacaACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcg                               >  1:66464/1‑149 (MQ=255)                                                                                                                       aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcgcgc                            <  7:130733/149‑1 (MQ=255)                                                                                                                       aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcgcgc                            >  1:362460/1‑149 (MQ=255)                                                                                                                       aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcgcgc                            >  2:250404/1‑149 (MQ=255)                                                                                                                       aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcgcgc                            >  3:381863/1‑149 (MQ=255)                                                                                                                        acagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAgcgcgc                            >  1:386572/1‑148 (MQ=255)                                                                                                                         cagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCa                          >  5:172800/1‑149 (MQ=255)                                                                                                                             gcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGaa                                                                                    <  2:181372/87‑1 (MQ=255)                                                                                                                             gcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGaa                                                                                    >  1:181372/1‑87 (MQ=255)                                                                                                                                   agcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGt                >  3:39534/1‑149 (MQ=255)                                                                                                                                   agcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGt                >  1:198321/1‑149 (MQ=255)                                                                                                                                    gcgcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt               <  2:198321/149‑1 (MQ=255)                                                                                                                                     cgcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGttt              >  2:309687/1‑149 (MQ=255)                                                                                                                                      gcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTg             <  2:137643/149‑1 (MQ=255)                                                                                                                                        gcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgtttcgat           <  5:393441‑M2/149‑106 (MQ=255)                                                                                                                                          tcatcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgc           >  2:93689/1‑147 (MQ=255)                                                                                                                                           catcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgttt               >  2:84372‑M2/1‑41 (MQ=255)                                                                                                                                           catcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgttt               <  1:84372‑M2/142‑102 (MQ=255)                                                                                                                                            atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGa                                                  >  5:63505/1‑106 (MQ=255)                                                                                                                                            atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGa                                                  <  6:63505/106‑1 (MQ=255)                                                                                                                                            atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGACGCGCGCCACGTGCACAGTTTGgcccgc       >  6:238254/1‑149 (MQ=255)                                                                                                                                            atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc       >  7:80643/1‑149 (MQ=255)                                                                                                                                             tcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagcc      <  1:104293/149‑1 (MQ=255)                                                                                                                                              caCCGCgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgt                 <  2:28810‑M1/137‑132 (MQ=255)                                                                                                                                              caCCGCgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgt                 >  1:28810‑M1/1‑6 (MQ=255)                                                                                                                                               aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt               >  7:134874/1‑138 (MQ=255)                                                                                                                                               aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt               <  8:134874/138‑1 (MQ=255)                                                                                                                                               aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc       >  3:308381/1‑146 (MQ=255)                                                                                                                                               aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc       <  4:308381/146‑1 (MQ=255)                                                                                                                                               aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGccagccag    <  2:362460/149‑1 (MQ=255)                                                                                                                                                ccGCgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccat                                       <  3:403846‑M1/113‑110 (MQ=255)                                                                                                                                                ccGCgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccat                                       >  4:403846‑M1/1‑4 (MQ=255)                                                                                                                                                 cgcgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgtttcgatgtgcgggtc  <  1:267948‑M1/149‑147 (MQ=255)                                                                                                                                                 cGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCcagccagc   >  5:4815/1‑148 (MQ=255)                                                                                                                                                  gcgcccacgcaaccttggcccgttcgtgactggggcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgtttcgatgtgcgggt   >  1:128670‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GATTTCGTCACGGCGCTTGCCCAGCCGCGGCCTGACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCA  >  NC_002947/3815580‑3815872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.