New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3815726	62 (0.950)	4 (0.060)	4/252	NT	6.3%	coding (394/1260 nt)	PP_3371	sensor histidine kinase
	?	NC_002947	= 3815758	60 (0.970)					coding (362/1260 nt)	PP_3371	sensor histidine kinase

GACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGCGGTCTTGATCGTCGTAAAGGCCTACTT  >  NC_002947/3815613‑3815902                                                                                                                                                  |                                                                                                                                                  gACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcg                                                                                                                                                <  1:267948‑M2/149‑4 (MQ=255)  aCCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgc                                                                                                                                                 >  1:128670‑M2/1‑145 (MQ=255)          aTCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATAc                                                                                                                                       >  5:369435/1‑149 (MQ=255)           tCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATAcc                                                                                                                                      >  2:217471/1‑149 (MQ=255)                aCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtg                                                                                                                                             <  2:28810‑M2/137‑7 (MQ=255)                aCGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtg                                                                                                                                             >  1:28810‑M2/1‑131 (MQ=255)                  ggCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACgg                                                                                                                               <  7:45480/149‑1 (MQ=255)                    ccTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGt                                                                                                                             >  8:381391/1‑149 (MQ=255)                     cTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTg                                                                                                                            <  1:65479/149‑1 (MQ=255)                      ttGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCTGTGCCATACCGACACgg                                                                                                                               <  7:121147/145‑1 (MQ=255)                      ttGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGACGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGCCCAAGGTTGCGTGGGCGCGGTGCAATACCGACACgggag                                                                                                                            >  8:121147/1‑146 (MQ=255)                        gggCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGc                                                                                                                          >  1:137643/1‑148 (MQ=255)                            aaCCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCAcc                                                                                                                      >  8:189930/1‑148 (MQ=255)                            aaCCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCg                                                                                                                     <  7:381391/149‑1 (MQ=255)                                    ccATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAgcgc                                                                                                               >  6:281973/1‑147 (MQ=255)                                    ccATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAgcgc                                                                                                               <  5:281973/147‑1 (MQ=255)                                     cATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCgca                                                                                                            <  1:217471/149‑1 (MQ=255)                                      aTGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcgg                                                                                                                                               >  4:403846‑M2/1‑109 (MQ=255)                                      aTGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcgg                                                                                                                                               <  3:403846‑M2/113‑5 (MQ=255)                                           cTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCa                                                                                                      <  6:369435/149‑1 (MQ=255)                                              gcgcAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTg                                                                                                   <  6:223951/149‑1 (MQ=255)                                                    ccAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGggcggc                                                                                             >  6:145009/1‑149 (MQ=255)                                                        gTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGt                                                                                          >  8:96197/1‑148 (MQ=255)                                                             cGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGTCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGt                                                                                    >  4:81001/1‑149 (MQ=255)                                                               gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGt                                                                                                    <  6:230917/131‑1 (MQ=255)                                                               gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGt                                                                                                    >  5:230917/1‑131 (MQ=255)                                                               gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGcc                                                                                            >  7:206791/1‑139 (MQ=255)                                                               gCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGcc                                                                                            <  8:206791/139‑1 (MQ=255)                                                                    gTCAGGT‑AAAGCTGCACAACAGCGCGAACAGCGCGCTCATCTCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGt                                                                           >  6:53011/1‑149 (MQ=255)                                                                     tCAGGTAAAAGCTGCACAACAGCGCAAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑c                                                                              >  2:318745/1‑146 (MQ=255)                                                                     tCAGGTAAAAGCTGCACAACAGCGCAAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑c                                                                              <  1:318745/146‑1 (MQ=255)                                                                       aGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGc                                                                         <  5:145009/149‑1 (MQ=255)                                                                         gTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCt                                                                       >  8:200037/1‑149 (MQ=255)                                                                            aaaGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGTCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGc                                                                     <  3:81001/148‑1 (MQ=255)                                                                              aGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCg                                                                  <  3:263054/149‑1 (MQ=255)                                                                                   cacaACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcg                                                             >  1:66464/1‑149 (MQ=255)                                                                                      aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcgcgc                                                          >  2:250404/1‑149 (MQ=255)                                                                                      aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcgcgc                                                          <  7:130733/149‑1 (MQ=255)                                                                                      aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcgcgc                                                          >  1:362460/1‑149 (MQ=255)                                                                                      aacagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcgcgc                                                          >  3:381863/1‑149 (MQ=255)                                                                                       acagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAgcgcgc                                                          >  1:386572/1‑148 (MQ=255)                                                                                        cagcgcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCa                                                        >  5:172800/1‑149 (MQ=255)                                                                                            gcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGaa                                                                                                                   <  2:181372/87‑1 (MQ=255)                                                                                            gcgaacagcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGaa                                                                                                                   >  1:181372/1‑87 (MQ=255)                                                                                                  agcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGt                                              >  1:198321/1‑149 (MQ=255)                                                                                                  agcgcgCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGt                                              >  3:39534/1‑149 (MQ=255)                                                                                                   gcgcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt                                             <  2:198321/149‑1 (MQ=255)                                                                                                    cgcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGttt                                            >  2:309687/1‑149 (MQ=255)                                                                                                     gcgcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTg                                           <  2:137643/149‑1 (MQ=255)                                                                                                       gcTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgtttcgat                                          <  5:393441‑M2/149‑106 (MQ=255)                                                                                                         tcatcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgc                                         >  2:93689/1‑147 (MQ=255)                                                                                                          catcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgttt                                              >  2:84372‑M2/1‑41 (MQ=255)                                                                                                          catcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgttt                                              <  1:84372‑M2/142‑102 (MQ=255)                                                                                                           atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGa                                                                                 <  6:63505/106‑1 (MQ=255)                                                                                                           atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGa                                                                                 >  5:63505/1‑106 (MQ=255)                                                                                                           atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGACGCGCGCCACGTGCACAGTTTGgcccgc                                     >  6:238254/1‑149 (MQ=255)                                                                                                           atcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc                                     >  7:80643/1‑149 (MQ=255)                                                                                                            tcaCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagcc                                    <  1:104293/149‑1 (MQ=255)                                                                                                              aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt                                             >  7:134874/1‑138 (MQ=255)                                                                                                              aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGtt                                             <  8:134874/138‑1 (MQ=255)                                                                                                              aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc                                     <  4:308381/146‑1 (MQ=255)                                                                                                              aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGgccagc                                     >  3:308381/1‑146 (MQ=255)                                                                                                              aCCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGccagccag                                  <  2:362460/149‑1 (MQ=255)                                                                                                                cGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCcagccagc                                 >  5:4815/1‑148 (MQ=255)                                                                                                                      aGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTTCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCAGGTGCACCGTTTGGCCAGCCAGCAAGCGGt                          <  2:267948/149‑1 (MQ=255)                                                                                                                       gTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAGCCAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGCGGt                          <  1:309687/149‑1 (MQ=255)                                                                                                                          aCGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGCGGTCtt                       >  7:256793/1‑148 (MQ=255)                                                                                                                            gAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGc                             >  7:9717/1‑140 (MQ=255)                                                                                                                            gAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGc                             <  8:9717/140‑1 (MQ=255)                                                                                                                               cGGGCCAAGGTTGCGTGGGCgcggtgatgagcgcgctgttcgcgctgttgtgcagcttttacctgacccggccgctgacctggctgcgcgaggccatgggccaggttgcccaaggccgtttcgatgtgcgggtcaggccgcggctgggc                  >  6:393441‑M2/1‑20 (MQ=255)                                                                                                                                              tGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGTCACGTGCACCGTTTGGCCAGCCAGCAAGCGGTCTTGATCGTCGTAAAGGCCTACtt  <  7:96197/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GACCCGCACATCGAAACGGCCTTGGGCAACCTGGCCCATGGCCTCGCGCAGCCAGGTCAGCGGCCGGGTCAGGTAAAAGCTGCACAACAGCGCGAACAGCGCGCTCATCACCGCCCCAGTCACGAACGGGCCAAGGTTGCGTGGGCGCGGTGCCATACCGACACGGGTGGCCACCGAAGCGCGCAGCACCAGTGGGCGGCCGTCACGGTCGAG‑CAGTGCCTGCTCGAAGCGCGCCACGTGCACCGTTTGGCCAGCCAGCAAGCGGTCTTGATCGTCGTAAAGGCCTACTT  >  NC_002947/3815613‑3815902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.