New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3973644	51 (0.780)	3 (0.050)	3/248	NT	5.2%	coding (829/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3973680	62 (1.010)					coding (793/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator

GCTGTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3973489‑3973644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggtggcAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGACCGCGCCGTTGCGCGACCGG  <  NC_002947/3973680‑3973537                                                                                                                                                                                                                                                                                                               GCTGTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACAT                                                                                                                                                          >  6:147678/1‑149     TAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGG                                                                                                                                                        <  4:392121/147‑1                                                 CCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCAC                                                                                                          <  2:220013/149‑1                                                                         CACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCAT                                                                                                      >  5:143948/1‑129                                                                         CACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCAT                                                                                                      <  6:143948/129‑1                                                                                                                                                     TGGGTGGCATCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGTATTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGA                      <  1:293935/133‑1                                                                                                                                                     TGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGA                      >  2:293935/1‑132                                                                                                                                                       GGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGACCGCGCCGTTGCGCGACCG   >  8:142898/1‑149                                                                                                                                                         TGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGACCGCGCCGTTGCGCGACCGG  >  1:225734/1‑148                                                                                                                                                         TGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGACCGCGCCGTTGCGCGACCGG  >  3:229540/1‑148                                                                                                                                                                                                                                                                                                               GCTGTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3973489‑3973644 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggtggcAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCATGTGGACCTTGAGCGGGCCATCGAGCAAGGGCGT‑TTCCGCGAAGACCTGTATTACCGCCTGAACGTCTTGCAGGTGGTGACCGCGCCGTTGCGCGACCGG  <  NC_002947/3973680‑3973537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.