New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3973644	51 (0.780)	3 (0.050)	3/248	NT	5.2%	coding (829/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	= 3973680	62 (1.010)					coding (793/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator

TGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCC  >  NC_002947/3973499‑3973789                                                                                                                                                    |                                                                                                                                                  tGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGgccgc                                                                                                                                                <  3:329451/149‑1 (MQ=255)   ggCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCa                                                                                                                                              <  6:417770/149‑1 (MQ=255)     cAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAg                                                                                                                                             >  6:247282/1‑148 (MQ=255)               ggCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACa                                                                                                                                   <  8:126126/148‑1 (MQ=255)                    gCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCAcc                                                                                                                             <  6:336627/149‑1 (MQ=255)                      aTCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCgg                                                                                                                           <  3:94851/149‑1 (MQ=255)                         gACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCGAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGAGGCCGCCAGCACCCGTACATCCACCGGTAt                                                                                                                        <  5:286507/149‑1 (MQ=255)                         gACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTAt                                                                                                                        <  3:210671/149‑1 (MQ=255)                          aCAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATg                                                                                                                       <  2:405286/149‑1 (MQ=255)                              gTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGggct                                                                                                                   >  3:324087/1‑149 (MQ=255)                                 aCCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCa                                                                                                                                              >  8:31885/1‑119 (MQ=255)                                       cctgTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGccac                                                                                                          <  7:288790/146‑1 (MQ=255)                                       ccGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCagccagcccataccggtggatgtacgggtgctggcggccac                                                                                                          <  2:220013‑M1/149‑42 (MQ=255)                                       ccGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgcca                                                                                                           >  3:229540‑M2/1‑144 (MQ=255)                                       ccGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgcca                                                                                                           >  1:225734‑M2/1‑144 (MQ=255)                                        cGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgccacc                                                                                                         >  8:142898‑M2/1‑143 (MQ=255)                                                cAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCt                                                                                                 <  5:147678/149‑1 (MQ=255)                                                  aCGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCg                                                                                               <  4:324087/149‑1 (MQ=255)                                                      cgcgGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCAGCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGAtgt                                                                                           <  5:401147/149‑1 (MQ=255)                                                           tCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAATACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGATgccaccca                                                                                                       <  1:293935‑M2/133‑9 (MQ=255)                                                           tCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgccaccca                                                                                                       >  2:293935‑M2/1‑124 (MQ=255)                                                              ccaccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GCAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTcc                                                                                   >  6:124379/1‑149 (MQ=255)                                                               caccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCagccagcccataccggtggatgtacgggtgctggcggccacccat                                                                                                      >  5:143948‑M1/1‑84 (MQ=255)                                                               caccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCagccagcccataccggtggatgtacgggtgctggcggccacccat                                                                                                      <  6:143948‑M1/129‑46 (MQ=255)                                                               caccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCt                                                                                  >  1:350630/1‑149 (MQ=255)                                                               caccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGACGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCt                                                                                  >  8:197821/1‑149 (MQ=255)                                                                accTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCTGGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCt                                                                                  >  1:276946/1‑149 (MQ=255)                                                                accTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTg                                                                                 >  4:33132/1‑149 (MQ=255)                                                                     cAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCaa                                                                              <  3:33132/147‑1 (MQ=255)                                                                      aaGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGa                                                                            >  3:208950/1‑148 (MQ=255)                                                                           gTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACgca                                                                      <  7:95537/149‑1 (MQ=255)                                                                                ggCGGTATTACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCaa                                                                              <  3:251587/136‑1 (MQ=255)                                                                                ggCGGTATTACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCaa                                                                              >  4:251587/1‑136 (MQ=255)                                                                                 gCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCaa                                                                              >  2:233100/1‑135 (MQ=255)                                                                                 gCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCaa                                                                              <  1:233100/135‑1 (MQ=255)                                                                                   ggTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTg                                                              <  5:247282/149‑1 (MQ=255)                                                                                   ggTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTg                                                              >  7:166482/1‑149 (MQ=255)                                                                                     tAATACAGGTCTTCGC‑GCAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGc                                                            <  5:124379/149‑1 (MQ=255)                                                                                      aaTACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGcc                                                           >  6:312344/1‑149 (MQ=255)                                                                                         aCAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGc                                                                                         <  1:201774/116‑1 (MQ=255)                                                                                         aCAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGc                                                                                         >  2:201774/1‑116 (MQ=255)                                                                                         aCAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCt                                                          <  6:285583/147‑1 (MQ=255)                                                                                         aCAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCt                                                          >  5:285583/1‑147 (MQ=255)                                                                                         aCAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTg                                                         >  5:54168/1‑148 (MQ=255)                                                                                           aGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCaa                                                      >  3:313511/1‑149 (MQ=255)                                                                                                      ggAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAAtt                                                    <  7:378355/141‑1 (MQ=255)                                                                                                      ggAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAAtt                                                    >  8:378355/1‑141 (MQ=255)                                                                                                             gCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGTACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCg                                      >  2:355808/1‑149 (MQ=255)                                                                                                                 ttGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGa                                  >  1:280187/1‑149 (MQ=255)                                                                                                                     tCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGAttt                               >  4:186357/1‑148 (MQ=255)                                                                                                                     tCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGAttt                               >  8:288480/1‑148 (MQ=255)                                                                                                                       gATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCGCCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTtc                              <  2:219908/147‑1 (MQ=255)                                                                                                                       gATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTtcat                            >  2:356340/1‑149 (MQ=255)                                                                                                                       gATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTtc                              <  4:313511/147‑1 (MQ=255)                                                                                                                           gCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAg                        <  7:288480/149‑1 (MQ=255)                                                                                                                            cccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAg                        >  2:261866/1‑148 (MQ=255)                                                                                                                            cccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGAAGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAg                        >  4:227393/1‑148 (MQ=255)                                                                                                                             ccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGa                       >  7:114291/1‑148 (MQ=255)                                                                                                                             ccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGa                       >  2:377472/1‑148 (MQ=255)                                                                                                                                   aaGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAAt                 <  8:166482/148‑1 (MQ=255)                                                                                                                                       tCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTgcc            <  5:239655/149‑1 (MQ=255)                                                                                                                                         cacaTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTgccgc          >  7:71613/1‑149 (MQ=255)                                                                                                                                            aTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtg                           >  5:143948‑M2/1‑45 (MQ=255)                                                                                                                                            aTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtg                           <  6:143948‑M2/129‑85 (MQ=255)                                                                                                                                             tGGGTGGCatccagcccataccggtggatgtacgggtgctggcggccacccatgtggaccttgagcgggccatcgagcaagggcgtattccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtga                      <  1:293935‑M1/133‑126 (MQ=255)                                                                                                                                             tGGGTGGCagccagcccataccggtggatgtacgggtgctggcggccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtga                       >  2:293935‑M1/1‑8 (MQ=255)                                                                                                                                               ggTGGCagccagcccataccggtggatgtacgggtgctggcggccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtgaccgcgccgttgcgcgaccg    >  8:142898‑M1/1‑6 (MQ=255)                                                                                                                                                gTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTgccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtgaccgcgccgttgcgcgaccgg   <  2:220013‑M2/149‑109 (MQ=255)                                                                                                                                                 tGGCagccagcccataccggtggatgtacgggtgctggcggccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtgaccgcgccgttgcgcgaccgg   >  1:225734‑M1/1‑4 (MQ=255)                                                                                                                                                 tGGCagccagcccataccggtggatgtacgggtgctggcggccacccatgtggaccttgagcgggccatcgagcaagggcgtttccgcgaagacctgtattaccgcctgaacgtcttgcaggtggtgaccgcgccgttgcgcgaccgg   >  3:229540‑M1/1‑4 (MQ=255)                                                                                                                                                 tGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGcc  >  3:100524/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGC‑GGAA‑ACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCC  >  NC_002947/3973499‑3973789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.