| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4027966 = | 53 (0.810) | 4 (0.060) | 4/256 | NT | 8.0% | coding (464/1407 nt) | PP_3552 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 4028017 = | 41 (0.650) | coding (413/1407 nt) | PP_3552 | two‑component system sensor histidine kinase | |||||
GAAGCCAACCGCGCCCGACGCCTGTATCGGCTGATCATCGAAAACACCACCGACCTGATTTCCCGGCACAGCCCCGATGGCCGCTTTCTCGATGCCTCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4028117‑4027966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTG > NC_002947/4028017‑4028122 GAAGCCAACCGCGCCCGACGCCTGTATCGGCTGATCATCGAAAACACCACCGACCTGATTTCCCGGCACAGCCCCGATGGCCGCTTTCTCGATGCCTCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCAT > 7:173391/1‑149 AGCCAACCGCGCCCGACGCCTGTATCGGCTGATCATCGAAAACACCACCGACCTGATTTCCCGGCACAGCCCCGATGGCCGCTTTCTCGATGCCTCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGC < 1:142953/149‑1 AGCCAACCGCGCCCGACGCCTGTATCGGCTGATCATCGAAAACACCACCGACCTGATTTCCCGGCACAGCCCCGATGGCCGCTTTCTCGATGCCTCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGC > 4:271913/1‑149 TCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGG > 5:229613/1‑149 CGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGG < 6:229613/149‑1 GGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGC > 3:362614/1‑149 CTACCGCCTGCTCGGCCTGTGGCCCGAGCAGC‑G‑GTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTG > 3:176450/1‑149 GAAGCCAACCGCGCCCGACGCCTGTATCGGCTGATCATCGAAAACACCACCGACCTGATTTCCCGGCACAGCCCCGATGGCCGCTTTCTCGATGCCTCACCGGCAGCCTACCGCCTGCTCGGCCTGTGGCCCGAGCAGCTGCGTGGCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4028117‑4027966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTG > NC_002947/4028017‑4028122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |