New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4027966 =	53 (0.810)	4 (0.060)	4/256	NT	8.0%	coding (464/1407 nt)	PP_3552	two‑component system sensor histidine kinase
	?	NC_002947	4028017 =	41 (0.650)					coding (413/1407 nt)	PP_3552	two‑component system sensor histidine kinase

CCGGCAGGTCATCGTGTGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGCTCTTCACTGGCATCGCGGCAG  >  NC_002947/4027869‑4028154                                                                                                                                                     |                                                                                                                                          ccaaccgcgcccgacgcctgtatcggctgatcatcgaaaacaccaccgacctgatttcccggcacagccccgatggccgctttctcgatgcctcaccGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCg                                                                                                                                           <  6:229613‑M1/52‑1 (MQ=255) ccGGCAGGTCATCGTGTGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCg                                                                                                                                           >  8:341366/1‑149 (MQ=255) ccGGCAGGTCATCGTGGGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCg                                                                                                                                           <  7:95654/149‑1 (MQ=255)     ccgcgcccgacgcctgtatcggctgatcatcgaaaacaccaccgacctgatttcccggcacagccccgatggccgctttctcgatgcctcaccGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGa                                                                                                                                       >  5:229613‑M1/94‑149 (MQ=255)     cAGGTCATCGTGTGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGa                                                                                                                                       <  4:285951/149‑1 (MQ=255)            tCGTGTGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATc                                                                                                                                 >  1:397301/1‑148 (MQ=255)              gtgtGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCgag                                                                                                                              <  8:185989/149‑1 (MQ=255)                 tgGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCgaga                                                                                                                             >  2:239874/1‑147 (MQ=255)                 tgGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCgaga                                                                                                                             >  8:173391/1‑147 (MQ=255)                    tAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCg                                                                                                                        >  2:386876/1‑149 (MQ=255)                      gCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGc                                                                                                                      >  3:271913/1‑149 (MQ=255)                        cGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGATAAAGCGGCCa                                                                                                                    <  1:239874/149‑1 (MQ=255)                         gTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCAt                                                                                                                   >  1:312239/1‑149 (MQ=255)                         gTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCAt                                                                                                                   <  1:386876/149‑1 (MQ=255)                            cTGGTCCAGGGCGGCAGCGGCCTTTCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGCGTATGTAGAGGCATGCCACGCATCTGCTCGTGCCAGAGGCCGAGCAGGCGGTTGGCTGCCGGTGAGGCTTCGAGAAAGCGGCCATCg                                                                                                                 <  5:19742/148‑1 (MQ=255)                                       cgGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCgg                                                                                                     <  2:66814/149‑1 (MQ=255)                                       cgGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCgg                                                                                                     <  2:397301/149‑1 (MQ=255)                                        ggCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCgg                                                                                                     >  7:136323/1‑148 (MQ=255)                                              ggCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCa                                                                                              <  2:312239/149‑1 (MQ=255)                                               gCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAg                                                                                             <  5:91246/149‑1 (MQ=255)                                                ccTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAgg                                                                                            <  4:171466/149‑1 (MQ=255)                                                    gcgcAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCgg                                                                                        >  1:3561/1‑149 (MQ=255)                                                     cgcAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCggt                                                                                       >  4:183468/1‑149 (MQ=255)                                                           aCCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGtt                                                                                 >  7:340707/1‑149 (MQ=255)                                                             cTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGtttt                                                                               <  8:136323/149‑1 (MQ=255)                                                             cTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGGGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGtttt                                                                               >  8:315969/1‑149 (MQ=255)                                                             cTGACGACGATCGCGCGGATGAATCAGGGTATGTACAGGCATGCAACTCAGCTTCTCGGGACACAGGAAGATCAGGCGGTATGATGCCGGTGACGCATCGAGAAAGCGGACATCGGGTCTCTGCCGGGAAATCAGGTCGGTGTTGttt                                                                                >  8:310243/1‑148 (MQ=255)                                                               gACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTATTTTc                                                                              >  8:328728/1‑148 (MQ=255)                                                                aCGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCga                                                                            <  7:315969/149‑1 (MQ=255)                                                                aCGCCGCGAGCGCTTATTCAGCAGTGTATGTACAGGCATTAAACGCAGATGCTCGGGCCACAGGCCGAGCAGGCGGTATGCTGCCTGTGAGGCATCGAGAAAGCGGCCATCGTGGCTGTGCCGGGAAATCATGTCGGTGGTGTTTTCga                                                                            <  7:310243/149‑1 (MQ=255)                                                                  gccgcTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCgatg                                                                          <  7:341366/149‑1 (MQ=255)                                                                     gcTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATc                                                                       <  2:3561/149‑1 (MQ=255)                                                                         gcgcgGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGc                                                                    <  5:235031/148‑1 (MQ=255)                                                                                  cagcagGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGAAGATCAGCCGATACAGGc                                                          >  7:304435/1‑149 (MQ=255)                                                                                          tATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGgcg                                                  >  6:13902/1‑149 (MQ=255)                                                                                             tcaccggcagcctaccgcctgctcggcctgtggcccgagcagctgcgtggcatgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCgg                                               >  5:229613‑M2/57‑149 (MQ=255)                                                                                                 cggcagcctaccgcctgctcggcctgtggcccgagcagctgcgtggcatgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTgg                                           <  6:229613‑M2/97‑1 (MQ=255)                                                                                                 aGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTgg                                           >  3:365938/1‑149 (MQ=255)                                                                                                  ggcagcctaccgcctgctcggcctgtggcccgagcagctgcgtggcatgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGc                                          >  3:362614‑M2/52‑149 (MQ=255)                                                                                                   GCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCt                                         >  4:271913‑M1/1‑149 (MQ=255)                                                                                                   GCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCt                                         <  1:142953‑M1/149‑1 (MQ=255)                                                                                                     ATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTc                                       >  7:173391‑M1/1‑149 (MQ=255)                                                                                                          ctaccgcctgctcggcctgtggcccgagcagcggtaggctgccGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTg                                  >  3:176450‑M2/44‑149 (MQ=255)                                                                                                                   ctCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATgg                          <  3:183468/148‑1 (MQ=255)                                                                                                                   ctCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGgc                         >  4:308467/1‑149 (MQ=255)                                                                                                                    tCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCgatgat                                                                        <  1:140254/101‑1 (MQ=255)                                                                                                                    tCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCgatgat                                                                        >  2:140254/1‑101 (MQ=255)                                                                                                                    tCGGGCCACAGGCCGAGCAGGCGGTAGGCAGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGgcg                        >  2:72533/1‑149 (MQ=255)                                                                                                                        gCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGctct                    >  4:111093/1‑149 (MQ=255)                                                                                                                        gCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGAAAATCAGGGCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGctct                    >  1:256008/1‑149 (MQ=255)                                                                                                                            caGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGCTCTTCAc                <  5:13902/149‑1 (MQ=255)                                                                                                                                 cGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGCTCTTCACTGGCa           >  3:241333/1‑149 (MQ=255)                                                                                                                                          ggTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGCTCTTCACTGGCATCGCGGCAg  >  3:347492/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                          CCGGCAGGTCATCGTGTGGTAGCCGTCCTGGTCCAGCGCGGCAGCGGCCTGGCGCAGTACCTGACGCCGCTCGCGCGGATGCAGCAGGGTATGTACAGGCATGCCACGCAGCTGCTCGGGCCACAGGCCGAGCAGGCGGTAGGCTGCCGGTGAGGCATCGAGAAAGCGGCCATCGGGGCTGTGCCGGGAAATCAGGTCGGTGGTGTTTTCGATGATCAGCCGATACAGGCGTCGGGCGCGGTTGGCTTCGCGTGCGCCATGGCGCTCTTCACTGGCATCGCGGCAG  >  NC_002947/4027869‑4028154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.