| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4040473 = | 49 (0.750) | 3 (0.050) | 3/252 | NT | 5.7% | coding (361/948 nt) | PP_3561 | membrane protein |
| ? | NC_002947 | 4040529 = | 52 (0.840) | coding (417/948 nt) | PP_3561 | membrane protein | |||||
GCCCGAAGCACCGTGGCGGGCGAACTGTGACGGGCGCTGAAGCGGGCAAACACCAGTACGCAGAGCAGGTTGACCAAGGGCACGATGGCAGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4040624‑4040473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTACG > NC_002947/4040529‑4040675 GCCCGAAGCACCGTGGCGGGCGAACTGTGACGGGCGCTGAAGCGGGCAAACACCAGTACGCAGAGCAGGTTGACCAAGGGCACGATGGCAGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGG < 7:375287/148‑1 CCCGAAGCACCGTGGCGGGCGAACTGTGACGGGCGCTGAAGCGGGCAAACACCAGTACGCAGAGCAGGTTGACCAAGGGCACGATGGCAGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTG > 3:99648/1‑149 CCGAAGCACCGTGGCGGGCGAACTGTGACGGGCGCTGAAGCGGGCAAACACCAGTACGCAGAGCAGGTTGACCAAGGGCACGATGGCAGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGG < 6:303045/149‑1 AGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCCCCCGTCACAGTTCGCCCGCCACGG > 6:311624/1‑149 CGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCG > 3:278482/1‑127 CGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCG < 4:278482/127‑1 TGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTA < 3:200243/149‑1 TGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTA < 4:149934/149‑1 GCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTACG < 3:169522/149‑1 GCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTACG > 6:67984/1‑149 GCCCGAAGCACCGTGGCGGGCGAACTGTGACGGGCGCTGAAGCGGGCAAACACCAGTACGCAGAGCAGGTTGACCAAGGGCACGATGGCAGCGTTGGCCACCGCCGCCAGGGCAATCCCGGCGCTGCCGTAGATGCCCGCAGCCAGGGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4040624‑4040473‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggcCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTGCTTCGGGCGATCTTCGCCAACCCGTTGATCGTCGGCTGCGCAGGGGGGCTGGTGCTACG > NC_002947/4040529‑4040675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |