New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4040473 =	49 (0.750)	3 (0.050)	3/252	NT	5.7%	coding (361/948 nt)	PP_3561	membrane protein
	?	NC_002947	4040529 =	52 (0.840)					coding (417/948 nt)	PP_3561	membrane protein

ACCGGTGCTGGGCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTG  >  NC_002947/4040325‑4040616                                                                                                                                                     |                                                                                                                                                aCCGGTGCTGGGCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTg                                                                                                                                                 >  4:204518/1‑149 (MQ=255)  cgtagcaccagcccccctgcgcagccgacgatcaacgggttggcgaagatcgcccgaagcaccgtggcgggcgaactgtgacgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGc                                                                                                                                                >  6:67984‑M1/148‑149 (MQ=255)  cgtagcaccagcccccctgcgcagccgacgatcaacgggttggcgaagatcgcccgaagcaccgtggcgggcgaactgtgacgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGc                                                                                                                                                <  3:169522‑M1/2‑1 (MQ=255)    tagcaccagcccccctgcgcagccgacgatcaacgggttggcgaagatcgcccgaagcaccgtggcgggcgaactgtgacgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGCCa                                                                                                                                              <  4:149934‑M1/4‑1 (MQ=255)    tagcaccagcccccctgcgcagccgacgatcaacgggttggcgaagatcgcccgaagcaccgtggcgggcgaactgtgacgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGCCa                                                                                                                                              <  3:200243‑M1/4‑1 (MQ=255)    ggTGCTGGGCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCa                                                                                                                                              <  3:204518/149‑1 (MQ=255)         tGGGCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTg                                                                                                                                         >  8:187132/1‑149 (MQ=255)           ggCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGc                                                                                                                                       >  2:92500/1‑149 (MQ=255)                atgcccagcACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCgg                                                                                                                                  <  6:318523/142‑1 (MQ=255)                 gcaggCGCACGGATGCTCTCGCACCTTGCCTGTGCCGTATTGCTGATGCTGTATCAGTGAGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAAGAACTACATCGGTTACACCCTGGCTGCgg                                                                                                                                  <  4:11485/145‑1 (MQ=255)                 gCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCgg                                                                                                                                  <  5:320273/148‑1 (MQ=255)                 gCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCgg                                                                                                                                  <  5:272379/148‑1 (MQ=255)                 gCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCgg                                                                                                                                  <  2:331678/148‑1 (MQ=255)                 gCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCgg                                                                                                                                  <  1:156906/148‑1 (MQ=255)                  ccGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCggg                                                                                                                                 >  5:169088/1‑148 (MQ=255)                               gCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAgcg                                                                                                                   >  4:72/1‑149 (MQ=255)                                         ttGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGTGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGc                                                                                                         <  2:286684/148‑1 (MQ=255)                                         cTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGc                                                                                                         <  1:273393/149‑1 (MQ=255)                                            gCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGCGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGccc                                                                                                       <  7:272913/148‑1 (MQ=255)                                                        ttGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTgg                                                                                           <  8:71120/148‑1 (MQ=255)                                                               ccgtggcgggcgaactgtgacgggggctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCt                                                                                   >  6:311624‑M1/87‑149 (MQ=255)                                                                      tCAGGGCGCGGCGATCCATGAGGGTTCCGACTTCACTTTGGTGTTTCAGGGCGGTATCCGCTTCTACAACTACATGGGTGCCACCCTGGCTGCGGGCATCTACGGGAGCTCCGGGATTGCCCTGGCGGGGGTGGCCAACGCTGCGATc                                                                             <  4:104662/148‑1 (MQ=255)                                                                      tCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCg                                                                            >  2:127383/1‑149 (MQ=255)                                                                               ggcgAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGGCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTgg                                                                   <  1:127383/149‑1 (MQ=255)                                                                               ggcgAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTgg                                                                   <  6:169088/149‑1 (MQ=255)                                                                                gcgAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGt                                                                  <  3:72/149‑1 (MQ=255)                                                                                  gAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCa                                                                               >  8:27596/1‑134 (MQ=255)                                                                                  gAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCa                                                                               <  7:27596/134‑1 (MQ=255)                                                                                   cgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACg                                                                                     >  3:278482‑M1/67‑127 (MQ=255)                                                                                   cgggcgctgaagcgggcaaacaccagtacgcagagcaggttgaccaagggcacgatggcagcgttgGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACg                                                                                     <  4:278482‑M1/61‑1 (MQ=255)                                                                                     ccATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTgg                                                                                           <  1:29979/119‑1 (MQ=255)                                                                                     ccATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTgg                                                                                           >  2:29979/1‑119 (MQ=255)                                                                                             gTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGc                                                     >  6:44203/1‑149 (MQ=255)                                                                                             gTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGCGCCCTTGGTCAACCTGCTCTGc                                                     <  5:245183/149‑1 (MQ=255)                                                                                               gCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCg                                                    >  3:377955/1‑148 (MQ=255)                                                                                                 cGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTAc                                                 <  5:44203/149‑1 (MQ=255)                                                                                                   acttcacttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTa                                                  <  6:385281/146‑1 (MQ=255)                                                                                                   acttcacttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTa                                                  >  5:385281/1‑146 (MQ=255)                                                                                                         cttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGttt                                         >  3:63469/1‑149 (MQ=255)                                                                                                          ttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTg                                        >  4:61922/1‑149 (MQ=255)                                                                                                          ttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGACAACCTGCTCTGCGTAc                                                 <  8:37859/140‑1 (MQ=255)                                                                                                          ttcGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGACAACCTGCTCTGCGTAc                                                 >  7:37859/1‑140 (MQ=255)                                                                                                               tgtTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGc                                   <  3:61922/149‑1 (MQ=255)                                                                                                               tgtTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGc                                   <  2:110490/149‑1 (MQ=255)                                                                                                                    cAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCa                               <  7:187132/148‑1 (MQ=255)                                                                                                                            tATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGc                                                          >  7:174806/1‑113 (MQ=255)                                                                                                                            tATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGc                                                          <  8:174806/113‑1 (MQ=255)                                                                                                                               ccGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGTATTGCCCTGGCGGCGGTg                                                                                            >  7:137227/1‑76 (MQ=255)                                                                                                                               ccGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGTATTGCCCTGGCGGCGGTg                                                                                            <  8:137227/76‑1 (MQ=255)                                                                                                                                cGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCTCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAg                  >  5:359382/1‑149 (MQ=255)                                                                                                                                 gCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGt                 >  8:39743/1‑149 (MQ=255)                                                                                                                                      aacaacTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTcgcc            >  4:352072/1‑149 (MQ=255)                                                                                                                                       acaacTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTcgccc           >  3:149934/1‑149 (MQ=255)                                                                                                                                         aacTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTcgcccgc         <  4:63469/149‑1 (MQ=255)                                                                                                                                            tACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCAc      >  4:99648/1‑149 (MQ=255)                                                                                                                                             aCATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACg     >  6:291579/1‑149 (MQ=255)                                                                                                                                             aCATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACg     >  8:224006/1‑149 (MQ=255)                                                                                                                                              cATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACgg    >  7:375444/1‑149 (MQ=255)                                                                                                                                                tCGGTGACAAACTCGCTGCGGGCATCTACGGCAGCGACGGGATTGCCCTGGCGGCGGTGGACAACGCTGCCATCGTGCCCTTCGACAACCTGCTATCCGTACTGGTGTTTGCCCCCTTCCGCGACCGTCACAGTTCGCCCCCCACGGTg  >  4:93055/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                ACCGGTGCTGGGCATGGCCGGCGCACTGATGCTCTCGACCCTGGCCGGTGCCGTATTGCTGATGCTGTATCAGGGCGCGGCGAACCATGAGGGTGCCGACTTCACTTCGGTGTTTCAGGGCGGTATCCGCTTCAACAACTACATCGGTGCCACCCTGGCTGCGGGCATCTACGGCAGCGCCGGGATTGCCCTGGCGGCGGTGGCCAACGCTGCCATCGTGCCCTTGGTCAACCTGCTCTGCGTACTGGTGTTTGCCCGCTTCAGCGCCCGTCACAGTTCGCCCGCCACGGTG  >  NC_002947/4040325‑4040616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.