New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4111640 =	46 (0.710)	4 (0.060)	4/250	NT	9.5%	coding (469/897 nt)	PP_3617	membrane protein
	?	NC_002947	4111713 =	33 (0.540)					coding (542/897 nt)	PP_3617	membrane protein

CCGGGCGGGGGGAGTTTGTCCGGGCCGTGGTCCATGAAGTGGCGGAGGTATTCCCATACCTCGGCGACATGCTTGACGCCGGGTTCGGTGGGTTCGTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4111788‑4111640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGGTGAACCCAACTGGTGGCACAAGCCACTGCACGCCATCTGCCTGACCCCGGC  >  NC_002947/4111713‑4111839                                                                                                                                                                                                                                                                                      CCGGGCGGGGGGAGTTTGTCCGGGCCGTGGTCCATGAAGTGGCGGAGGTATTCCCATACCTCGGCGACATGCTTGACGCCGGGTTCGGTGGGTTCGTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCG                                                                                                                                 >  7:324033/1‑149                                                                        CTTGACGCCGGGTTCGGTGGGTTCGTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCG                                                          >  1:234548/1‑149                                                                         TTGACGCCGGGTTCGGTGGGTTCGTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGC                                                         >  5:117309/1‑149                                                                                                GTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGGTGAACCCAACTGGTGGCAC                                  <  6:117309/149‑1                                                                                                                                 CAGGCTGCCGTCTTCCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGGTGAACCCAACTGGTGGCACAAGCCACTGCACGCCATCTGCCTGACCCCGGC  <  2:234548/148‑1                                                                                                                                                                                                                                                                                      CCGGGCGGGGGGAGTTTGTCCGGGCCGTGGTCCATGAAGTGGCGGAGGTATTCCCATACCTCGGCGACATGCTTGACGCCGGGTTCGGTGGGTTCGTTACTGTCGACCCAGAGGCAGTCTTTTTGATGCAGGCTGCCGTCTTCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4111788‑4111640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcgTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGGTGAACCCAACTGGTGGCACAAGCCACTGCACGCCATCTGCCTGACCCCGGC  >  NC_002947/4111713‑4111839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.