New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4111640 =	46 (0.710)	4 (0.060)	4/250	NT	9.5%	coding (469/897 nt)	PP_3617	membrane protein
	?	NC_002947	4111713 =	33 (0.540)					coding (542/897 nt)	PP_3617	membrane protein

AATCGGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGG  >  NC_002947/4111496‑4111788                                                                                                                                                 |                                                                                                                                                     aaTCTGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCccgccg                                                                                                                                                  <  6:299725/149‑1 (MQ=255) aaTCGGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCccgccg                                                                                                                                                  <  4:245017/149‑1 (MQ=255)  aTCGGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCgg                                                                                                                                                 <  3:164556/149‑1 (MQ=255)   tCGGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGTGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCggg                                                                                                                                                <  1:95269/149‑1 (MQ=255)              aaaaaaTCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGc                                                                                                                                     <  7:354943/149‑1 (MQ=255)              aaaaaaTCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCAACAGCTATGCCCTAGCCTTCGCCCCCAGCCGTGAAGACTGCAGc                                                                                                                                     >  5:17367/1‑149 (MQ=255)              aaaaaaTCTACTATCAACGTTAAAGCAACGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCATCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGc                                                                                                                                     <  8:70701/149‑1 (MQ=255)                aaaaTCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCt                                                                                                                                   <  6:249242/149‑1 (MQ=255)                  gccggggtcaggcagatggcgtgcagtggcttgtgccaccagttgggttcaccgggcggggggagtttgtccgggccgtggtccatgaagtggcggaggtattcccatacctcggcgacatgcttgaCGCCGGGAAGACGGCAGCCTg                                                                                                                                  <  2:234548‑M1/21‑1 (MQ=255)                        ctaTCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCAt                                                                                                                               <  6:128768/145‑1 (MQ=255)                           tCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCgg                                                                                                                                                 >  7:368757/1‑124 (MQ=255)                           tCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCgg                                                                                                                                                 <  8:368757/124‑1 (MQ=255)                           tCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCaaa                                                                                                                           >  6:150606/1‑146 (MQ=255)                             aaCGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGAc                                                                                                                      >  6:282144/1‑149 (MQ=255)                              aCGTTTCAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGGACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACt                                                                                                                     <  4:263192/149‑1 (MQ=255)                              aCGTATAAGCAAGGAACTGGACTTAGAGTGGAGCAAAACCGGCGGTGGTATTTTTAAGCCTACGGAATACTGCGGCTCATCAGTCAGAACCAGCTAAGCCCACGCCATCGCCCCCCGCCGCTAAGACAGCAGCATGCATCAAAAAGACt                                                                                                                     >  4:172876/1‑149 (MQ=255)                                gTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGc                                                                                                                   <  3:181476/149‑1 (MQ=255)                                gTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGc                                                                                                                   >  4:181476/1‑149 (MQ=255)                                          ggTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCg                                                                                                         <  2:342839/149‑1 (MQ=255)                                          ggTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCg                                                                                                         <  2:120282/149‑1 (MQ=255)                                               tGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAg                                                                                                     >  4:403849/1‑148 (MQ=255)                                                 gTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGt                                                                                                    <  3:182330/147‑1 (MQ=255)                                                  gtgccaccagttgggttcaccgggcggggggagtttgtccgggccgtggtccatgaagtggcggaggtattcccatacctcggcgacatgcttgaCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAAc                                                                                                 <  6:117309‑M1/54‑1 (MQ=255)                                                    tttGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACg                                                                                                >  8:326009/1‑148 (MQ=255)                                                       gAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACa                                                                                                      >  8:7019/1‑139 (MQ=255)                                                       gAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACa                                                                                                      <  7:7019/139‑1 (MQ=255)                                                               cAATACCGGCGGTTGTATTTTTAAGCGTACGGAATACGGCGGCAAATCATTAACCAACAGAAAAGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCAAGAAAAAGAATGCGTCTGGGTCGACAGTAACGAACCCACCGAAc                                                                                    >  8:194393/1‑149 (MQ=17)                                                                    ccGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGc                                                                               >  2:256194/1‑149 (MQ=255)                                                                     cggcggTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCACCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGTGTCGACACTAACGAACCCACCCAACCCGGCg                                                                              >  7:359797/1‑149 (MQ=255)                                                                      ggcggTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGt                                                                             >  1:200591/1‑149 (MQ=255)                                                                         ggtggtATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCaa                                                                          <  5:282144/149‑1 (MQ=255)                                                                         gcggggggagtttgtccgggccgtggtccatgaagtggcggaggtattcccatacctcggcgacatgcttgaCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCaa                                                                          >  5:117309‑M1/73‑149 (MQ=255)                                                                          cggggggagtttgtccgggccgtggtccatgaagtggcggaggtattcccatacctcggcgacatgcttgaCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAg                                                                         >  1:234548‑M1/72‑149 (MQ=255)                                                                             gtATTTTTAAGCGTACGCATTACGGCGTCTCATCATTCAGAACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCAt                                                                      <  7:194393/149‑1 (MQ=255)                                                                                tttttAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGt                                                                    <  1:256194/148‑1 (MQ=255)                                                                                tttttAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGACTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTc                                                                   >  7:167438/1‑149 (MQ=255)                                                                                     aaGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGcc                                                                >  3:138950/1‑147 (MQ=255)                                                                                      aGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGACCCCGGCGTCAAGCATGTCGCCGa                                                              <  3:172876/148‑1 (MQ=255)                                                                                      aGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGa                                                              <  7:326009/148‑1 (MQ=255)                                                                                      aGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAg                                                             <  5:150606/149‑1 (MQ=255)                                                                                              gAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGa                                                     <  4:138950/149‑1 (MQ=255)                                                                                                   cggcggCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATAcc                                                >  4:113867/1‑149 (MQ=255)                                                                                                          tcatcaTTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCg                                                                  <  2:190544/124‑1 (MQ=37)                                                                                                          tcatcaTTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCg                                                                  >  1:190544/1‑124 (MQ=37)                                                                                                            atcatTCAGCACCAGCTATGCCCTCCCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCAc                                        <  6:17367/148‑1 (MQ=255)                                                                                                               atTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCa                                    <  2:200591/149‑1 (MQ=38)                                                                                                                ttCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCAGGGAAGACTGGAGCCTGCATCAAAAAGACTGCGTCTGGGTCGACAGTAACGAACCCACCGAACCCGGGGTCAAGCATGTCGCCGAGGTATGGGAATACGTCCGCCACTTCAt                                   <  8:359797/149‑1 (MQ=11)                                                                                                                    gCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGAc                               <  3:403849/149‑1 (MQ=35)                                                                                                                                 ccTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGAc                   >  8:324033/1‑148 (MQ=37)                                                                                                                                 ccTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGAc                   >  1:280179/1‑148 (MQ=37)                                                                                                                                        ttCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTccc           >  5:389395/1‑149 (MQ=37)                                                                                                                                           gCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTcccccc        >  8:149795/1‑149 (MQ=39)                                                                                                                                               cccGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCcccgccc    <  6:389395/149‑1 (MQ=39)                                                                                                                                               cccGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCcccgccc    >  3:140973/1‑149 (MQ=39)                                                                                                                                                 CGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCgg  >  7:324033‑M1/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AATCGGGCGACCCAAAAAATCTACTATCAACGTTTAAGCAAGGTACTGGTCTTTGAGTGGAGCAATACCGGCGGTGGTATTTTTAAGCGTACGGAATACGGCGGCTCATCATTCAGCACCAGCTATGCCCTCGCCTTCGCCCCCCGCCGGGAAGACGGCAGCCTGCATCAAAAAGACTGCCTCTGGGTCGACAGTAACGAACCCACCGAACCCGGCGTCAAGCATGTCGCCGAGGTATGGGAATACCTCCGCCACTTCATGGACCACGGCCCGGACAAACTCCCCCCGCCCGG  >  NC_002947/4111496‑4111788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.