| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4348206 = | NA (NA) | 3 (0.050) | 3/250 | NT | NA | coding (430/1422 nt) | PP_3820 | group II intron‑encoding maturase |
| ? | NC_002947 | 4392679 = | NA (NA) | coding (336/1422 nt) | PP_3868 | group II intron‑encoding maturase | |||||
GTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4348359‑4348206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTG > NC_002947/4392679‑4392826 GTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGC < 4:261810/149‑1GTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAG > 7:371390/1‑148 TGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCA > 8:140370/1‑149 TGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGC > 5:41723/1‑148 GAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCAC > 2:141927/1‑149 AAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACT > 3:148910/1‑149 AAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACT > 3:215059/1‑149 AACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTG < 4:191971/149‑1 AACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTG > 1:179730/1‑149 ACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC < 8:251397/149‑1 CAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTG > 8:2760/1‑147 CAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTG > 2:360118/1‑147 CATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCAC < 3:94130/100‑1 CATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCAC > 4:94130/1‑100 CCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAt > 4:134833/1‑147 AGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTG < 3:328123/126‑1 AGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTG > 4:328123/1‑126 GCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTG < 5:62511/149‑1 GCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCT > 8:52966/1‑148 GCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCT > 8:316999/1‑148 GCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCACCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCT > 2:94406/1‑148 ACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAG < 5:9517/149‑1 TGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGT > 1:316511/1‑149 CTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTG < 7:269113/149‑1 GTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGTATCCCCAGCGTCGTGGATCGCCTGATCCAGCAAGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4348359‑4348206‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcactgcTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTG > NC_002947/4392679‑4392826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |