New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4348206 =	NA (NA)	3 (0.050)	3/250	NT	NA	coding (430/1422 nt)	PP_3820	group II intron‑encoding maturase
	?	NC_002947	4392679 =	NA (NA)					coding (336/1422 nt)	PP_3868	group II intron‑encoding maturase

CTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTG  >  NC_002947/4348060‑4348218                                                                                                                                                   |             ctcCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGctgctgctg              >  6:175607/1‑147 (MQ=32)    cAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtg         >  2:186915/1‑149 (MQ=32)    cAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGt          <  5:175607/148‑1 (MQ=32)          gAGTTCCACGAACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGtgcttgct   <  8:66717/149‑1 (MQ=17)           aGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTg  <  1:186915/149‑1 (MQ=31)                                                                                                                                                   |             CTCCAGATCGAGTTCCACGCACCAGCGGTGTCCCGCTGTCACATGAGCACGAGCCATCTCGATGGCTTGATGCGTACTTCTGCCCGGACGAAAACCATAGCTGTAGTCCGAGAACAGTGGGTCGAAGATAGGTGTGAGCTGCTGCTGCAGTGCTTGCTG  >  NC_002947/4348060‑4348218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.