New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4348206 = | NA (NA) | 3 (0.050) | 3/250 | NT | NA | coding (430/1422 nt) | PP_3820 | group II intron‑encoding maturase |
? | NC_002947 | 4392679 = | NA (NA) | coding (336/1422 nt) | PP_3868 | group II intron‑encoding maturase |
GGTATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGC > NC_002947/4392656‑4392803 | ggaaTTTCAACCGCTCCCACTGCATGCGGATCGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCAcgc < 4:310142/145‑1 (MQ=1) | GGTATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCACGTAGCCCGCCAAGTCAGCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGC > NC_002947/4392656‑4392803 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |