New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 457553143 (0.660)8 (0.130) 8/244 NT 17.3% intergenic (+49/‑73) glgX/ybhP‑II glycogen debranching enzyme/phosphohydrolase
?NC_002947 = 4575558 37 (0.620)intergenic (+76/‑46) glgX/ybhP‑II glycogen debranching enzyme/phosphohydrolase

TACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4575374‑4575531
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaacccTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATCGAAT  <  NC_002947/4575558‑4575413
                                                                                                                                                                                                                                                                                                                
TACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCAC                                                                                                                                                             >  2:328890/1‑149
    GACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCC                                                                                                                                                          >  3:153591/1‑148
                         GGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACA                                                                                                                                    >  5:190027/1‑149
                                        TTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGT                                                                                                                     <  3:274260/149‑1
                                           GATAGTACGATCGAGGTGAAGGGGCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGACCGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTG                                                                                                                  <  5:390076/149‑1
                                               GTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGT                                                                                                              <  6:190027/149‑1
                                                   GTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGC                                                                                                                <  7:153169/143‑1
                                                   GTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGC                                                                                                                >  8:153169/1‑143
                                                                                                    GAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGG                                                                                                                      <  5:136853/88‑1
                                                                                                    GAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGG                                                                                                                      >  6:136853/1‑88
                                                                                                                                                    CGCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTAC          >  6:42984/1‑148
                                                                                                                                                     GCCAAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTA        >  7:179984/1‑149
                                                                                                                                                        AAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATC      >  1:328470/1‑148
                                                                                                                                                        AAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTG                                                      >  3:196192/1‑100
                                                                                                                                                        AAACCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTG                                                      <  4:196192/100‑1
                                                                                                                                                           CCCTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATCGAAT  <  6:317469/149‑1
                                                                                                                                                                                                                                                                                                                
TACCGACCGGCCGGAGTTGCGCAAGGGGCAGCACCTGCAATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGATCGCCACGCCAAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4575374‑4575531
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaacccTGTGGGGGCCGGTACACCGTTCCCACCGGGTTTGGCGTGGCGATCACAACGTAGGACCTGCCTGGGCTATCACCGTTCACTCCTCGTCGTACTGCAACACCATCAGCAGCATCGACCGACCCTTCACCTCGAACGTACTATCGAAT  <  NC_002947/4575558‑4575413

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.