New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4575531	43 (0.660)	8 (0.130)	8/244	NT	17.3%	intergenic (+49/‑73)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase
	?	NC_002947	= 4575558	37 (0.620)					intergenic (+76/‑46)	glgX/ybhP‑II	glycogen debranching enzyme/phosphohydrolase

ATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCC  >  NC_002947/4575413‑4575691                                                                                                                                                    |                                                                                                                                      aTTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAggg                                                                                                                                    <  6:317469‑M2/149‑4 (MQ=255)     gATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggttt                                                                                                                                 >  1:328470‑M2/1‑142 (MQ=255)       tAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggc                                                                                                                              >  7:179984‑M2/1‑140 (MQ=255)         gTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcg                                                                                                                             >  6:42984‑M2/1‑138 (MQ=255)             gTTCGAGGTGACGGGTCGGTGGAGGCTGCTGTTGGTGTTGCAGTACGACGAGGAGTCAACGTTCATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCAAAACCGGGTGGTAACGGTGTACCGGCCCCAACAGGGTTTGGCGGCGAc                                                                                                                        <  4:186798/149‑1 (MQ=255)             gTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGgcggcgc                                                                                                                         >  8:96126/1‑147 (MQ=255)                  aGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGt                                                                                                                     >  1:402220/1‑147 (MQ=255)                     tGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCC‑AACCCCGTGGGAACCGTGTACCGGCCCCCACAAGGTTTGGCGGCCACAGTGaag                                                                                                                 >  7:53661/1‑145 (MQ=255)                          ggtcggtcGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGt                                                                                                           >  5:118498/1‑149 (MQ=255)                               gtcgATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACt                                                                                                      >  8:141791/1‑149 (MQ=255)                                tcgATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCACGGTTAACtt                                                                                                     >  6:157015/1‑149 (MQ=255)                                  gttgctgcTGATGGTGTTGCATTACGACGAGGAGTTAACGGTGATCGCCCAGGCTGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACTGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTc                                                                                                    <  6:118498/146‑1 (MQ=255)                                      ctgctgATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGAAGGCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCag                                                                                                  >  1:120339/1‑148 (MQ=255)                                       tgctgATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCaggag                                                                                               >  1:308720/1‑148 (MQ=255)                                         ctgATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCTCCACGCCAAACCCGGTTGCAACGGTGTACCGGACCCCACTGGGTTTGGAGGCGAAAGTGAGGCAGGGGTAAATTCAGGAGGaa                                                                                            >  7:289044/1‑149 (MQ=255)                                          ttagggTGTTCCTGTTCGACGTGGTTTTAAGGGTTATAGCCCTGGCTGGTCCTAGGTTGTTA‑‑TCCCCACGCC‑AACCCGGTGGGAACGGTGTACCGGCCCCCACTGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATc                                                                                          <  8:53661/145‑1 (MQ=255)                                                gtttGCAGTTCCACGCGCTGTCACCGGTTATCGCCCCGGCCGGCCGTACGTTGTGC‑‑CCCCCACCCCAAACCGGGTGGCACGGTTGTCCGGGCCCCCACTGGTTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAg                                                                                     <  4:153591/147‑1 (MQ=255)                                                    gCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTc                                                                                 >  5:108954/1‑149 (MQ=255)                                                     cAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggttt                                                                                                                                 >  3:196192‑M2/1‑94 (MQ=255)                                                     cAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggttt                                                                                                                                 <  4:196192‑M2/100‑7 (MQ=255)                                                              gaggagTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCa                                                                       <  5:317469/149‑1 (MQ=255)                                                                ggagTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAg                                                                      >  3:230803/1‑148 (MQ=255)                                                                  agTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCGCGCAGGGTTTGGCGGCGACAGTGAGGCAGGGTGAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTaa                                                                   >  8:66848/1‑149 (MQ=255)                                                                            gATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTAAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGc                                                          >  7:111003/1‑148 (MQ=255)                                                                             aTAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACCGTGTACCGGCCACCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGc                                                          >  7:38007/1‑147 (MQ=255)                                                                                  ccAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGt                                                    >  6:129300/1‑148 (MQ=255)                                                                                       caggTCCTAGGTTGTTA‑‑TCGCCCCGCCAAACCCGGTGGTAAGGGTTTACGGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCa                                              <  8:31139/149‑1 (MQ=255)                                                                                             cTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGcccc                                        >  3:30601/1‑149 (MQ=255)                                                                                             cTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGcccc                                        >  7:241184/1‑149 (MQ=255)                                                                                              tACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGCCAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCg                                       >  2:376320/1‑149 (MQ=255)                                                                                              tACGTTGTGA‑‑TCGCCACGCCAAACACGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCg                                       >  2:381825/1‑149 (MQ=255)                                                                                                 gTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGcc                                    >  6:102978/1‑149 (MQ=255)                                                                                                   tgtgA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGt                                  >  1:372681/1‑149 (MQ=255)                                                                                                            cccacgccaACCCGGGGGGGAACGGTGTACCGCCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGc                           <  4:30601/148‑1 (MQ=255)                                                                                                               acgccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacctcgaacgtac                        <  6:190027‑M2/149‑112 (MQ=255)                                                                                                               acgccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTg                        >  7:66707/1‑149 (MQ=255)                                                                                                                cgccaAAGCGGGTGGTAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGc                       <  8:66707/149‑1 (MQ=255)                                                                                                                 gccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacctcgaac                            >  8:153169‑M2/1‑36 (MQ=255)                                                                                                                 gccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacctcgaac                            <  7:153169‑M2/143‑108 (MQ=255)                                                                                                                  ccaACCCCGGGGGTAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCgg                     <  1:244891/149‑1 (MQ=255)                                                                                                                  ccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCgg                     >  5:46853/1‑149 (MQ=255)                                                                                                                  ccaAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCgg                     <  5:102978/149‑1 (MQ=255)                                                                                                                   caAACCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccggtcactcctcgtcgtactgcaacaccatcagcagcatcgaccgccccttcacctcgatcgtactatc                    <  5:390076‑M2/149‑116 (MQ=255)                                                                                                                   caAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGc                                                                        >  5:182479/1‑97 (MQ=255)                                                                                                                   caAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGc                                                                        <  6:182479/97‑1 (MQ=255)                                                                                                                      aCCCGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacctcgaacgtactatcgaa                 <  3:274260‑M2/149‑119 (MQ=255)                                                                                                                       cccGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctc                                                                             <  5:136853‑M2/88‑59 (MQ=255)                                                                                                                       cccGGTGGGAACGGTGTACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctc                                                                             >  6:136853‑M2/1‑30 (MQ=255)                                                                                                                                  cGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATa     >  6:141668/1‑149 (MQ=255)                                                                                                                                   ggTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATAc    <  5:129300/149‑1 (MQ=255)                                                                                                                                    gtgtACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATAcc   >  6:204606/1‑149 (MQ=255)                                                                                                                                     tgtACCGGCCCCCACAgggtttggcgtggcgatcacaacgtaggacctgcctgggctatcaccgttcactcctcgtcgtactgcaacaccatcagcagcatcgaccgacccttcacctcgaacgtactatcgaattgcaggtgctgccc  >  5:190027‑M2/1‑16 (MQ=255)                                                                                                                                     tgtACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATAcc   >  6:325013/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                      ATTCGATAGTACGTTCGAGGTGAAGGGTCGGTCGATGCTGCTGATGGTGTTGCAGTACGACGAGGAGTGAACGGTGATAGCCCAGGCAGGTCCTACGTTGTGA‑‑TCGCCACGCCAAACCCGGTGGGAACGGTGTACCGGCCCCCACAGGGTTTGGCGGCGACAGTGAGGCAGGGTTAACTTCAGGAGGAATCGTGAGCCTCGAAGCCGGCAGTAATGGTTTCGCCAGCGTCAGCCAGGCCCCGGCCGTGAAACGCCTGCGGGTACTGACGGTGAATACCC  >  NC_002947/4575413‑4575691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.