New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4611681 | 73 (1.120) | 4 (0.060) | 4/250 | NT | 5.7% | intergenic (+643/‑1464) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
? | NC_002947 | = 4611701 | 63 (1.020) | intergenic (+663/‑1444) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein |
GACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4611527‑4611681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCT < NC_002947/4611701‑4611555 GACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCT > 2:100682/1‑149 ATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGC < 6:3905/149‑1 GCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATG > 2:393375/1‑149 TGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGG < 8:302018/149‑1 GGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGGG > 5:190692/1‑144 GGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGGG < 6:190692/144‑1 GACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCA < 1:393375/149‑1 GCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGC < 4:199562/149‑1 GCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGG < 3:385433/121‑1 GCCTTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGG > 4:385433/1‑121 TTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCT > 4:162732/1‑148 TTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGC < 3:324498/97‑1 TTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGC > 4:324498/1‑97 TTGATGGCGCCATCGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTCATGATCAGCTTCTGCAGCTTTTCACTGTGCGCAAAGCGCTACAGGAAGCCTACTTCAGCGCCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCT > 4:156791/1‑148 GACCATCAGGTGCGCGAATTCTGCGTTCAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTGGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4611527‑4611681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcctTGATGGCGCCATGGCTGATCAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCCAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCT < NC_002947/4611701‑4611555 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |