New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 470013661 (0.940)4 (0.070) 3/244 NT 6.2% coding (552/2655 nt) kdpD sensor protein
?NC_002947 = 4700167 64 (1.060)coding (521/2655 nt) kdpD sensor protein

ACGATAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699980‑4700136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttcgagcTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATGCAGACCG  <  NC_002947/4700167‑4700021
                                                                                                                                                                                                                                                                                                                
ACGATAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGAATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGC                                                                                                                                                             >  7:39653/1‑149
  GATAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGT                                                                                                                                                           >  4:152072/1‑149
  GATAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGT                                                                                                                                                           >  4:129351/1‑149
    TAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTC                                                                                                                                                         >  7:347181/1‑149
    TAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTC                                                                                                                                                         <  2:208277/149‑1
       CCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAG                                                                                                                                                      <  3:384360/149‑1
        CGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGC                                                                                                                                                     <  6:301020/149‑1
        CGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAG                                                                                                                                                      >  3:193169/1‑148
             GCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGCTGGTG                                                                                                                                                >  2:195411/1‑149
                                                CATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACG                                                                                                             <  1:195411/149‑1
                                                CATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAAC                                                                                                              <  3:303483/148‑1
                                                      aacCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTC                                                                                                                                                         <  1:130299/96‑1
                                                      CAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTC                                                                                                                                                         >  2:130299/1‑99
                                                                               GTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCAAAC                                                                                                              >  7:269596/1‑117
                                                                               GTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCAAAC                                                                                                              <  8:269596/117‑1
                                                                                                                                                     GTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATGC        >  7:35692/1‑149
                                                                                                                                                     GTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATG         >  7:147920/1‑148
                                                                                                                                                     GTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCA                                                                            >  3:246875/1‑81
                                                                                                                                                     GTTCGAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCA                                                                            <  4:246875/81‑1
                                                                                                                                                         GAGCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATGCAGAC    <  1:201882/149‑1
                                                                                                                                                           GCTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATGCAGACCG  >  5:44755/1‑149
                                                                                                                                                                                                                                                                                                                
ACGATAGCCGTGGGCCAGGTCGGCATCGACCTGAGCAGCGGCGGTCTGCATGGCCAGCTCGCGCAGGGCGGTGAGGTTGGTTTGCGAAAAATACGCATCGATGGCCGCCCTTGCCTGCTCGGGCACGTACACCTTGCCTTCACGCAGGCGTTCGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4699980‑4700136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttcgagcTGGTGCTGATCGACCTGCCTCCGCGAGAGCTGCTCGAACGCCTGCGTGAAGGCAAGGTGTACGTGCCCGAGCAGGCAAGGGCGGCCATCGATGCGTATTTTTCGCAAACCAACCTCACCGCCCTGCGCGAGCTGGCCATGCAGACCG  <  NC_002947/4700167‑4700021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.