New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 495543368 (1.040)4 (0.070) 3/246 NT 5.6% coding (1322/1374 nt) fliI flagellum‑specific ATP synthase
?NC_002947 = 4955456 72 (1.190)coding (1299/1374 nt) fliI flagellum‑specific ATP synthase

TGCTGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955277‑4955433
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgcgccaGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  <  NC_002947/4955456‑4955310
                                                                                                                                                                                                                                                                                                                 
TGCTGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATTGCCCCCAGCTGTTCGCGGCT                                                                                                                                                              >  5:310248/1‑149
  CTGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTC                                                                                                                                                             <  3:198519/148‑1
  CTGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTC                                                                                                                                                             <  4:45307/148‑1
  CTGGAAATGGCCAAGGAGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCT                                                                                                                                                            >  4:178904/1‑149
     GAAATGGCCAAGGCGCTGAGCCGCCTTTCTCGCGGCATCTTCGGCAATGTCCACCACCGGCTCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCG                                                                                                                                                         <  8:328886/149‑1
     GAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGACAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCAGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCCCGGCTATGCG                                                                                                                                                         >  2:213056/1‑149
      AAATGGCCAAGGCGCTGAGCCACCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGAGAAAATCGCCCCCAGCTGTTCGCGGCTATGCGC                                                                                                                                                        >  1:104294/1‑149
                                        CCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATTGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGA                                                                                                                     <  6:310248/149‑1
                                         CTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAG                                                                                                                    <  3:24157/149‑1
                                            TTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTTCGCCAGGGCCTGCCGCGAGAACGTGGGCATGGCGCAGAG                                                                                                                    <  1:4667/147‑1
                                                 CCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAG                                                                                                                      >  4:69118/1‑139
                                                                                                                                                    TCTGCGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGG         >  7:56481/1‑149
                                                                                                                                                       GCGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGCGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCc      >  6:292867/1‑148
                                                                                                                                                        CGCCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCC       <  5:197676/147‑1
                                                                                                                                                          CCAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCATGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGC   >  7:104487/1‑149
                                                                                                                                                           CAGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCCGCAGGGTGATAAGCCATGGCGCTGCCCGGTCGTGCCGCGCGCCGCGCGCCGGTGGTGGACATGCCCGAAGACGCCGAGCG  >  3:243938/1‑149
                                                                                                                                                            AGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  >  8:326383/1‑148
                                                                                                                                                                                                                                                                                                                 
TGCTGGAAATGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4955277‑4955433
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgcgccaGGGCCTG‑CGCGAGAACGTGGGCATGGCGCAGAGCCGCGAACAGCTGGGGGCGATTTTCACGCCCCCGGCAGGTTGATAAGCCATGGCGCTGCCCGGACGTGCCGCGCGCCTGGCGCCGGTGGTGGACATGGCCGAAGAGGCCGAGCG  <  NC_002947/4955456‑4955310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.