New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955433	68 (1.040)	4 (0.070)	3/246	NT	5.6%	coding (1322/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955456	72 (1.190)					coding (1299/1374 nt)	fliI	flagellum‑specific ATP synthase

CGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCG  >  NC_002947/4955310‑4955595                                                                                                                                                    |                                                                                                                                             cgcTCGGCGTCTTCGGGCATGTCCACCACCGGCGCGCGGCGCGCGGCACGACCGGGCAGCGCCATGGCTTATCACCCTGCGGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtg                                                                                                                                            >  3:243938‑M2/1‑147 (MQ=255) cgcTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCt                                                                                                                                             >  8:326383‑M2/1‑147 (MQ=255)  gcTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCATGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtgg                                                                                                                                           >  7:104487‑M2/1‑146 (MQ=255)     gggcCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCGCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgc                                                                                                                                        >  6:292867‑M2/2‑143 (MQ=255)      ggCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcg                                                                                                                                         <  5:197676‑M2/147‑6 (MQ=255)        ccTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcaga                                                                                                                                     >  7:56481‑M2/1‑140 (MQ=255)          tctTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGaaa                                                                                                                                   >  4:376709/1‑149 (MQ=255)           ctTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAAc                                                                                                                                  <  8:191125/149‑1 (MQ=255)                gCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                                             <  3:283261/149‑1 (MQ=255)                 ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCGCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                                             >  2:86438/1‑148 (MQ=255)                 ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCCGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAcc                                                                                                                            <  2:142463/149‑1 (MQ=255)                     gTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCt                                                                                                                        >  2:70521/1‑149 (MQ=255)                      tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                                             >  3:376461/1‑143 (MQ=255)                      tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                                             <  4:376461/143‑1 (MQ=255)                      tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCtt                                                                                                                       <  4:211242/149‑1 (MQ=255)                       ccaccaCCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTc                                                                                                                      >  8:30965/1‑149 (MQ=255)                        caccacCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTc                                                                                                                      >  3:165880/1‑148 (MQ=255)                          ccaccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAt                                                                                                                   <  5:7720/149‑1 (MQ=255)                           caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGc                                                                                                                         >  3:51138/1‑142 (MQ=255)                           caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGc                                                                                                                         <  4:51138/142‑1 (MQ=255)                           caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAtt                                                                                                                  >  3:357599/1‑149 (MQ=255)                             ccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                                                <  4:357599/149‑1 (MQ=255)                              cGGCGCGAGGCGCGCTGCTCGTCCGGGCAGGGCCATGGCTTATCAACCTGCCGGGGGCGTGAATATCGGGCCCAGCTGTTCGCGGCTCTGCGGCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                                                <  2:104294/148‑1 (MQ=255)                              cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGa                                                                                                                    <  8:143077/144‑1 (MQ=255)                              cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAtagat                                                                                                               >  7:143077/1‑145 (MQ=255)                              cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                                                >  2:306917/1‑148 (MQ=255)                                  gcCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAgg                                                                                                            >  3:296613/1‑148 (MQ=255)                                     aGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAAt                                                                                                        <  7:30965/149‑1 (MQ=255)                                      ggCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                                       <  7:71188/149‑1 (MQ=255)                                        cgcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGc                                                                                                     <  4:213181/149‑1 (MQ=255)                                        cgcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGc                                                                                                     >  4:361004/1‑149 (MQ=255)                                         gcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGcc                                                                                                    <  7:210883/149‑1 (MQ=255)                                          cgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCa                                                                                                   <  8:33884/149‑1 (MQ=255)                                           gcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAg                                                                                                  <  1:70521/149‑1 (MQ=255)                                             ggCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGt                                                                                                <  6:197676/149‑1 (MQ=255)                                               cACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCATCTGTTCGCGGCTCTGCGCCATGCACACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCa                                                                                              >  6:411748/1‑149 (MQ=255)                                                  gTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                                           >  8:15126/1‑149 (MQ=255)                                                      gggCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGTGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGTAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                                       <  1:203581/149‑1 (MQ=255)                                                       ggCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCgg                                                                                      <  5:411748/149‑1 (MQ=255)                                                         cAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGAt                                                                                    <  1:213056/149‑1 (MQ=255)                                                               cATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                                       <  2:273798/140‑1 (MQ=255)                                                               cATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                                       >  1:273798/1‑140 (MQ=255)                                                                   gCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAg                                                                           <  7:15126/148‑1 (MQ=255)                                                                         cAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACa                                                                      >  2:286643/1‑147 (MQ=255)                                                                           aCCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGt                                                                                            >  4:125978/1‑123 (MQ=255)                                                                           aCCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAgg                                                                  >  4:379854/1‑149 (MQ=255)                                                                             cTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                                                <  4:296613/149‑1 (MQ=255)                                                                             cTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                                                <  5:398776/149‑1 (MQ=255)                                                                              tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCaa                                                                                                              <  7:9530/102‑1 (MQ=255)                                                                              tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCaa                                                                                                              >  8:9530/1‑102 (MQ=255)                                                                              tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                                           <  7:100137/121‑1 (MQ=255)                                                                              tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                                           >  8:100137/1‑121 (MQ=255)                                                                                ccGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAcc‑c                                                            <  3:178904/149‑1 (MQ=255)                                                                                     ggCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCt                                                       <  6:361548/149‑1 (MQ=255)                                                                                           aaaaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAg                                                 >  6:251621/1‑149 (MQ=255)                                                                                             aaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                                       >  5:44152/1‑94 (MQ=255)                                                                                             aaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                                       <  6:44152/94‑1 (MQ=255)                                                                                                     ccggCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCCATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCCCC‑CCCGCTGATCAGGTCGCGGCtt                                       >  3:349341/4‑149 (MQ=255)                                                                                                     ccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCtt                                       >  5:66880/1‑149 (MQ=255)                                                                                                        gCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGc                                    <  3:376709/149‑1 (MQ=255)                                                                                                         cTGTTCGCGGCTCTGCGCCATGCCTACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGc                                    >  2:139088/1‑148 (MQ=255)                                                                                                            ttCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGa                                  <  1:306917/147‑1 (MQ=255)                                                                                                               gcgGCTCTGCGCCATGTCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAcc‑c                                                            <  7:321517/118‑1 (MQ=255)                                                                                                               gcgGCTCTGCGCCATGTCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAcc‑c                                                            >  8:321517/1‑118 (MQ=255)                                                                                                                   ctctGCGCCATGCCCACGTTCTCGCGGCAGGCCCtggcgaagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaa                             <  1:4667‑M2/147‑114 (MQ=255)                                                                                                                   ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagag                          <  3:24157‑M2/149‑117 (MQ=255)                                                                                                                   ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa                         <  3:379854/149‑1 (MQ=255)                                                                                                                   ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa                         <  8:259676/149‑1 (MQ=255)                                                                                                                   ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa                         <  4:165880/149‑1 (MQ=255)                                                                                                                    tctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcaattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagagg                         <  6:310248‑M2/149‑118 (MQ=255)                                                                                                                     ctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatgg                                  >  4:69118‑M2/1‑31 (MQ=255)                                                                                                                        cgcCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACca                      >  6:42677/1‑147 (MQ=255)                                                                                                                          ccATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGt                  >  1:190336/1‑149 (MQ=255)                                                                                                                                ctaCGTTCTCGCG‑CAAGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTg            <  1:139088/147‑1 (MQ=255)                                                                                                                                ccACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGtgctagg            >  1:349098/1‑143 (MQ=255)                                                                                                                                ccACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGc               <  2:349098/146‑1 (MQ=255)                                                                                                                                ccACGTTCTCGCG‑CACGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAATGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCTCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCtt             <  1:94098/149‑1 (MQ=255)                                                                                                                                 cACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTg            >  1:357464/1‑148 (MQ=255)                                                                                                                                 cACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTg            >  5:44667/1‑148 (MQ=255)                                                                                                                                  aCGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGaa          <  8:76528/149‑1 (MQ=255)                                                                                                                                  aCGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGa           >  3:237512/1‑148 (MQ=255)                                                                                                                                      tctcGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTc      >  7:178585/1‑149 (MQ=255)                                                                                                                                      tctcGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTc      >  3:4026/1‑149 (MQ=255)                                                                                                                                          gcg‑cAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTgcg  >  4:63737/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                             CGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACC‑CACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGTTGCTTGAACTTCTGCG  >  NC_002947/4955310‑4955595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.