New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4955433	68 (1.040)	4 (0.070)	3/246	NT	5.6%	coding (1322/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_002947	= 4955456	72 (1.190)					coding (1299/1374 nt)	fliI	flagellum‑specific ATP synthase

TGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGT  >  NC_002947/4955286‑4955579                                                                                                                                                    |                                                                                                                                                    tGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGCCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAt                                                                                                                                                    <  7:214425/149‑1 (MQ=255)  ggCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATg                                                                                                                                                   >  7:76528/1‑149 (MQ=255)    ccAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGcc                                                                                                                                                 >  5:361548/1‑149 (MQ=255)    ccAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGcc                                                                                                                                                 >  4:283261/1‑149 (MQ=255)     cAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAACTCGCCCCCCGCTGATCGCGTCTCTGCGCGATGcc                                                                                                                                                 >  4:243938/1‑148 (MQ=255)               aGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTtctc                                                                                                                                        <  6:343250/147‑1 (MQ=255)               aGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTcgc                                                                                                                                      >  3:213181/1‑149 (MQ=255)                 ccgccTAGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAAACTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTcgcg                                                                                                                                     >  7:259676/1‑148 (MQ=255)                      ttGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGTGCCATGCCCACGTTCTCGCG‑CAGGcc                                                                                                                              >  2:203581/1‑149 (MQ=255)                      ttGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGcc                                                                                                                              >  3:211242/1‑149 (MQ=255)                         cgcTCGGCGTCTTCGGGCATGTCCACCACCGGCGCGCGGCGCGCGGCACGACCGGGCAGCGCCATGGCTTATCACCCTGCGGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtg                                                                                                                           >  3:243938‑M2/1‑147 (MQ=255)                         cgcTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCt                                                                                                                            >  8:326383‑M2/1‑147 (MQ=255)                          gcTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCATGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtgg                                                                                                                          >  7:104487‑M2/1‑146 (MQ=255)                             gggcCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCGCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgc                                                                                                                       >  6:292867‑M2/2‑143 (MQ=255)                              ggCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcg                                                                                                                        <  5:197676‑M2/147‑6 (MQ=255)                                ccTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATTGCCCCCAGCTGTTCGCGGCTCTGCGCCAgggcctgcgcgagaacgtgggcatggcgcaga                                                                                                                     <  6:310248‑M1/149‑33 (MQ=255)                                ccTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcaga                                                                                                                    >  7:56481‑M2/1‑140 (MQ=255)                                 ctctTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAgggcctgcgcgagaacgtgggcatggcgcagag                                                                                                                    <  3:24157‑M1/149‑34 (MQ=255)                                  tctTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGaaa                                                                                                                  >  4:376709/1‑149 (MQ=255)                                   ctTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAAc                                                                                                                 <  8:191125/149‑1 (MQ=255)                                    ttCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTTCGCCAgggcctgccgcgagaacgtgggcatggcgcagag                                                                                                                   <  1:4667‑M1/147‑35 (MQ=255)                                        gCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                            <  3:283261/149‑1 (MQ=255)                                         ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCAgggcctgcgcgagaacgtgggcatggcgcag                                                                                                                      >  4:69118‑M1/1‑108 (MQ=255)                                         ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCGCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                            >  2:86438/1‑148 (MQ=255)                                         ccATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCCGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAcc                                                                                                           <  2:142463/149‑1 (MQ=255)                                          cATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTtctc                                                                                                                                        >  3:149589/1‑120 (MQ=255)                                          cATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTtctc                                                                                                                                        <  4:149589/120‑1 (MQ=255)                                             gTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCt                                                                                                       >  2:70521/1‑149 (MQ=255)                                              tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                            <  4:376461/143‑1 (MQ=255)                                              tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAAc                                                                                                            >  3:376461/1‑143 (MQ=255)                                              tCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCtt                                                                                                      <  4:211242/149‑1 (MQ=255)                                               ccaccaCCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTc                                                                                                     >  8:30965/1‑149 (MQ=255)                                                caccacCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTc                                                                                                     >  3:165880/1‑148 (MQ=255)                                                  ccaccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAt                                                                                                  <  5:7720/149‑1 (MQ=255)                                                   caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGc                                                                                                        >  3:51138/1‑142 (MQ=255)                                                   caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGc                                                                                                        <  4:51138/142‑1 (MQ=255)                                                   caccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAtt                                                                                                 >  3:357599/1‑149 (MQ=255)                                                     ccGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                               <  4:357599/149‑1 (MQ=255)                                                      cGGCGCGAGGCGCGCTGCTCGTCCGGGCAGGGCCATGGCTTATCAACCTGCCGGGGGCGTGAATATCGGGCCCAGCTGTTCGCGGCTCTGCGGCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                               <  2:104294/148‑1 (MQ=255)                                                      cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGa                                                                                                   <  8:143077/144‑1 (MQ=255)                                                      cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGAtagat                                                                                              >  7:143077/1‑145 (MQ=255)                                                      cGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGc                                                                                               >  2:306917/1‑148 (MQ=255)                                                          gcCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAgg                                                                                           >  3:296613/1‑148 (MQ=255)                                                             aGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAAt                                                                                       <  7:30965/149‑1 (MQ=255)                                                              ggCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                      <  7:71188/149‑1 (MQ=255)                                                                cgcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGc                                                                                    >  4:361004/1‑149 (MQ=255)                                                                cgcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGc                                                                                    <  4:213181/149‑1 (MQ=255)                                                                 gcgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGcc                                                                                   <  7:210883/149‑1 (MQ=255)                                                                  cgcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCa                                                                                  <  8:33884/149‑1 (MQ=255)                                                                   gcgGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAg                                                                                 <  1:70521/149‑1 (MQ=255)                                                                     ggCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGt                                                                               <  6:197676/149‑1 (MQ=255)                                                                       cACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCATCTGTTCGCGGCTCTGCGCCATGCACACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCa                                                                             >  6:411748/1‑149 (MQ=255)                                                                          gTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                          >  8:15126/1‑149 (MQ=255)                                                                              gggCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGTGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGTAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                      <  1:203581/149‑1 (MQ=255)                                                                               ggCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCgg                                                                     <  5:411748/149‑1 (MQ=255)                                                                                 cAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGAt                                                                   <  1:213056/149‑1 (MQ=255)                                                                                       cATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                      <  2:273798/140‑1 (MQ=255)                                                                                       cATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCg                                                                      >  1:273798/1‑140 (MQ=255)                                                                                           gCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAg                                                          <  7:15126/148‑1 (MQ=255)                                                                                                 cAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACa                                                     >  2:286643/1‑147 (MQ=255)                                                                                                   aCCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGt                                                                           >  4:125978/1‑123 (MQ=255)                                                                                                   aCCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAgg                                                 >  4:379854/1‑149 (MQ=255)                                                                                                     cTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                               <  4:296613/149‑1 (MQ=255)                                                                                                     cTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCa                                               <  5:398776/149‑1 (MQ=255)                                                                                                      tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCaa                                                                                             <  7:9530/102‑1 (MQ=255)                                                                                                      tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCaa                                                                                             >  8:9530/1‑102 (MQ=255)                                                                                                      tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                          >  8:100137/1‑121 (MQ=255)                                                                                                      tGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGtc                                                                          <  7:100137/121‑1 (MQ=255)                                                                                                        ccGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAccc                                            <  3:178904/149‑1 (MQ=255)                                                                                                             ggCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCt                                       <  6:361548/149‑1 (MQ=255)                                                                                                                   aaaaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAg                                 >  6:251621/1‑149 (MQ=255)                                                                                                                     aaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                      >  5:44152/1‑94 (MQ=255)                                                                                                                     aaTCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATg                                                                                      <  6:44152/94‑1 (MQ=255)                                                                                                                             ccggCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCCATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCCCCCCCGCTGATCAGGTCGCGGCtt                       >  3:349341/4‑149 (MQ=255)                                                                                                                             ccAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCtt                       >  5:66880/1‑149 (MQ=255)                                                                                                                                gCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGc                    <  3:376709/149‑1 (MQ=255)                                                                                                                                 cTGTTCGCGGCTCTGCGCCATGCCTACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGc                    >  2:139088/1‑148 (MQ=255)                                                                                                                                    ttCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGa                  <  1:306917/147‑1 (MQ=255)                                                                                                                                       gcgGCTCTGCGCCATGTCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAccc                                            >  8:321517/1‑118 (MQ=255)                                                                                                                                       gcgGCTCTGCGCCATGTCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCAccc                                            <  7:321517/118‑1 (MQ=255)                                                                                                                                           ctctGCGCCATGCCCACGTTCTCGCGGCAGGCCCtggcgaagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaa            <  1:4667‑M2/147‑114 (MQ=255)                                                                                                                                           ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagag         <  3:24157‑M2/149‑117 (MQ=255)                                                                                                                                           ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa         <  8:259676/149‑1 (MQ=255)                                                                                                                                           ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa         <  4:165880/149‑1 (MQ=255)                                                                                                                                           ctctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGa         <  3:379854/149‑1 (MQ=255)                                                                                                                                            tctGCGCCAgggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagagg         >  7:56481‑M1/1‑9 (MQ=255)                                                                                                                                            tctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcaattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagagg        <  6:310248‑M2/149‑118 (MQ=255)                                                                                                                                             ctGCGCCATGCCCACGTTCTCGCG‑CAGGCCCtggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatgg                 >  4:69118‑M2/1‑31 (MQ=255)                                                                                                                                               gcgcCAgggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggcgcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggccc      >  6:292867‑M1/1‑6 (MQ=255)                                                                                                                                                cgcCAgggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggcc       <  5:197676‑M1/147‑143 (MQ=255)                                                                                                                                                cgcCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACca      >  6:42677/1‑147 (MQ=255)                                                                                                                                                  ccAgggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggggcgattttcatgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggccgagc   >  7:104487‑M1/1‑3 (MQ=255)                                                                                                                                                  ccATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGt  >  1:190336/1‑149 (MQ=255)                                                                                                                                                   cAgggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggggcgattttcacgccccccgcagggtgataagccatggcgctgcccggtcgtgccgcgcgccgcgcgccggtggtggacatgcccgaagacgccgagcg  >  3:243938‑M1/1‑2 (MQ=255)                                                                                                                                                    agggcctgcgcgagaacgtgggcatggcgcagagccgcgaacagctgggggcgattttcacgcccccggcaggttgataagccatggcgctgcccggacgtgccgcgcgcctggcgccggtggtggacatggccgaagaggccgagcg  >  8:326383‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGCCAAGGCGCTGAGCCGCCTTGCGCTCGGCCTCTTCGGCCATGTCCACCACCGGCGCCAGGCGCGCGGCACGTCCGGGCAGCGCCATGGCTTATCAACCTGCCGGGGGCGTGAAAATCGCCCCCAGCTGTTCGCGGCTCTGCGCCATGCCCACGTTCTCGCG‑CAGGCCCTGGCGCAGAAACTCAACCAGCTTCGATTGCAAGGCAATGGCCAGGTCAGTCTCCGGATCACCGCCAGCTACATAGGCACCCACGCTGATCAGGTCGCGGCTTTGCGACAGGCGCGACCACAGT  >  NC_002947/4955286‑4955579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.