| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4979191 = | 57 (0.880) | 3 (0.050) | 3/248 | NT | 5.2% | coding (231/786 nt) | flgG | flagellar basal‑body rod protein FlgG |
| ? | NC_002947 | 4979266 = | 56 (0.920) | coding (156/786 nt) | flgG | flagellar basal‑body rod protein FlgG | |||||
CTGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4979346‑4979191‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaccAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAG > NC_002947/4979266‑4979411 CTGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGT < 3:153812/149‑1 GCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGG < 4:389816/148‑1 TCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGG < 5:234544/141‑1 TCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGG > 6:234544/1‑141 CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTG > 7:313198/1‑93 CTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTG < 8:313198/93‑1 CAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTC > 4:271759/1‑148 AGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGA < 3:271759/149‑1 CTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGAC > 4:2596/1‑149 GGCACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAA < 3:389816/149‑1 ACCAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAG > 1:163174/1‑149 CTGGCCAACGTCTCGACCACCGGCTTCAAGCGTGATCGCGCCGAATTCGCAGACCTGCTCTACCAGATCAAGCGCCAGCCTGGTGCCCAGTCGACCCAGGACAGCGAGCTGCCCTCGGGCCTGCAGGTCGGTACCGGTGTGCGTATCGTGGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4979346‑4979191‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggcaccAGGCTGGCGCTTGATCTGGTAGAGCAGGTCTGCGAATTCGGCGCGATCACGCTTGAAGCCGGTGGTCGAGACGTTGGCCAGGTTGTTGGAAATGACCGTCAGGTTGGTGTCCTGAGCGGACAGGCCGGTTTTAGCGACCCAAAGAG > NC_002947/4979266‑4979411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |