| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5083008 | 64 (0.980) | 4 (0.060) | 4/252 | NT | 6.6% | coding (1258/2625 nt) | alaS | alanine‑‑tRNA ligase |
| ? | NC_002947 | = 5083059 | 53 (0.850) | coding (1207/2625 nt) | alaS | alanine‑‑tRNA ligase | |||||
GGGCGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5082855‑5083008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCCGGCTTCGAGCGTGAAATGGACGCCCAGCGTGAGCGCGCCCGCTCCGCCAGCGCCTTCGGCATGGATTACAACAGCCTGGTCAAGGTCGACA < NC_002947/5083059‑5082912 GGGCGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCG < 7:344469/149‑1 GGCGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGG < 4:35463/149‑1 GCGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGC < 4:131311/149‑1 CGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCT > 1:369041/1‑149 GATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTT > 2:168849/1‑149 CCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCCCGATGGACC > 7:101858/1‑149 GTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGAC > 8:385425/1‑148 ACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCC < 8:101858/149‑1 CTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCCG < 7:385425/148‑1 CTTCCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCCGGCTTCGAGCGTGAAATGGACGCCCAGCGTGAGCGCGCCCGCTCCGCCAGCGCCTTCGGCATGGATTACAACAGCCTGGTCAAGGTC > 5:172539/1‑148 CCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCCGGCTTCGAGCGTGAAATGGACGCCCAGCGTGAGCGCGCCCGCTCCGCCAGCGCCTTCGGCATGGATTACAACAGCCTGGTCAAGGTCGACA > 7:26330/1‑149 GGGCGATGATCTTGCCCTGGCCCTCGGTGGCGTCGTAACCGAGGAACTCGGTGGCGCTGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5082855‑5083008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcCCGATGGACCTGACTGCCGACATCGCTCGTGAGCGTGAGCTGACCATCGACGAAGCCGGCTTCGAGCGTGAAATGGACGCCCAGCGTGAGCGCGCCCGCTCCGCCAGCGCCTTCGGCATGGATTACAACAGCCTGGTCAAGGTCGACA < NC_002947/5083059‑5082912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |